jgi.p|Nanoce1779_2|593563, gene_6039 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593563
Unique Namegene_6039
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:379685..382444 +

Link to JBrowse

Properties
Property NameValue
TranscriptId593649
ProteinId593563
Product namestearoyl-CoA desaturase
Portal idNanoce1779_2
Mutants
The following records are associated with this feature:
TitleMethodAccession dateLast modified date
delta-9 fatty acid desaturasesOverexpression2019-05-102020-04-01
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:379685..382444 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004768stearoyl-CoA 9-desaturase activity
GO:0016491oxidoreductase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01570NO16G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593563mRNA_6039-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593563mRNA_6039Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|593563

>mRNA_6039-protein ID=mRNA_6039-protein|Name=jgi.p|Nanoce1779_2|593563|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MVFQLARDSVSALVYHFKEGNLNWPMIIYLVLVHLAGYIGLTTILACKWQ
TLLEAFILWPITGLGITAGVHRLWAHRSYNATLPYRILLMLFNSIANQGS
IYHWSRDHRVHHKYSETDADPHNATRGFFFAHMGWLIVKKHPKVVEGGKQ
LDFSDLAADPVVRFQRDWDPWFAQFMCFVMPALVASRFWGEAFWNAFWVA
GALRYMLVLHFTWMVNSAAHLYGDHPYDPTMWPAENPLVSVVAIGEGWHN
WHHRYPYDYAASEFGISQQFNPTKAFIDFFAAIGMVTNRKRATGAWAKLK
ESRARDAANGKSMKDFKGRGSGSDYGTTNTNYAVSNKTVVTDKGAQQPGW
EESNHPKYN*
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Synonyms
Publications
YearPublication
2018Poliner E, Pulman JA, Zienkiewicz K, Childs K, Benning C, Farré EM. A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production. Plant biotechnology journal. 2018 01; 16(1):298-309.