jgi.p|Nanoce1779_2|648715, gene_5542 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|648715
Unique Namegene_5542
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:675230..683388 +

Link to JBrowse

Properties
Property NameValue
TranscriptId648801
ProteinId648715
Product nameeukaryotic translation initiation factor 3 subunit C
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:675230..683388 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03650NO12G03650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648715mRNA_5542-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648715mRNA_5542Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|648715

>mRNA_5542-protein ID=mRNA_5542-protein|Name=jgi.p|Nanoce1779_2|648715|organism=Nannochloropsis oceanica|type=polypeptide|length=1058bp
MSRPGGKLWQGSDDDSSASETEAVVDVGGVEKRQQKRWEVDSDSESEDEV
RVVRSAKDKAWDEMKDKVVKIQNALKINDWIIVENEFDDLNKRVEAKRAL
FGTGAFPKFYIKLCVTLEEKLVEIRDKAKEGTAKKMSAGNERSFKRMKNK
LNKNNKTHEAEIALYKQDPAAYMADEAAMDEVSGSSSSSSSSSSSSSSDS
SDSDSDSSSSSSSDSDSDSDSDSSSSSSSSSSSSSSSSSGSSAPIARKKT
NKLFDGSDSDFSDSDESSSSESEAENQLKGRARWLKRAPTGKEKEKDEKK
RQQRIGEVGADGEQIARRKKKVGMEGGAAAAAAARSLLYDQLTLPEYKKK
VTEVVASRGRRSTGSAELLRQLQHLAYVGRRFGLAEEAPVVMHLILAMFD
TKRAVDEPMHVGLWQQCAAYLQRLLALLEAAPSRVLKNGTDVADSLVTAM
GRTSLAAMPEGGAEGVGEQKGEEEGVARADLDYDAEIIQVPGSFGYFVTR
LADEYTKSLQRINPHTGDYVARLKDEAVLLRLAQGVQAYYNPRCLQSPPS
CLAVISIKYIYYKHDSLAAKVAADRAYFEKWGSLASIHPACLGGVAPIPP
PPAGGKIDATTMHPAAVSSERPERKEQVDEGEPRNFQKEVAELAIFVYRH
GEARQKMLAMLCQIAHHALHDRFHEARNLYLMSHIARDINELEDEMKILF
NRTMVQLGLCAFRHGLIHEAHQCLSEICSKRPKELLAQGIARSFHHRDQD
PEAEKEERRRQLPYHMHINIDLLELCHLTSAMLLEVPNLATMEGRVDRKR
VISGYFRKVLQQYETQAFAGPPEIIRDHILAAASALATGDWRTCRDLVFK
PDVWHRIPGPGAVEKVQAMLLEKIKAEGLRTYLFTFSPFYDSLSLPQLCD
MFEMERGTAHSIISKMMIYGELHATWDQPTETIVLQRVEASHLQILALQY
ADRDLWERMRGWCTSRAAVGMERKGKTATTTEEEGEDEAEDEAEGGGGGR
GGGDGGGGEEGGWNQSGGRGRGRGRGRGRGRGGGGGYRGGGGFGGGGGFN
SFRSAGF*
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Synonyms
Publications