jgi.p|Nanoce1779_2|671398, gene_5299 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671398
Unique Namegene_5299
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:107110..110267 +

Link to JBrowse

Properties
Property NameValue
TranscriptId671484
ProteinId671398
Product nameclathrinadaptor gamma chain putative
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:107110..110267 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO:0030117membrane coat
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01410NO12G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671398mRNA_5299-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671398mRNA_5299Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|671398

>mRNA_5299-protein ID=mRNA_5299-protein|Name=jgi.p|Nanoce1779_2|671398|organism=Nannochloropsis oceanica|type=polypeptide|length=905bp
MTMRLRELIRAVRACKTAAEERAVIAKESALIRTAIKEEHEQYRHRNVAK
LLFIHMLGYPSHFGQMECLKLIASPHFFEKRIGYLGLSLLLTEQEEVLTL
VTNSIKNDLMSPNPFVVGLALSAVGNLATEDIARDLAMDIDKHLKSSNSY
LRKKAALAMIRVLRKVPDLIEDFIERITSLLKDRSHGVLLTGIELMTEVM
RMDTVHTPAFSRMVPSVLRLLRNLLTMGYAPDHDVAGITDPFLQVKLLYM
LQCLGKSNPEASDAMNDLLAQVATNTETAKNAGNSILYQCVQTIMSIESE
AGLRVLAINILGRFLLNRDNNIRYVALNTLSKVVVKDAASVQRHRNTIVD
CLKDPDVSIRQRALELIYQLVNPQNVQDLAREMLNYLVVAPSEHKASLCS
KLMHVVESFSPSPRWRLDTLLSMLAIAGQACDPTIPHAVVYYISTAEDLQ
RYAAHKLFVLLQEDASQQGLVVTAVWVIGELGDLLLQPQPALDDDTPSFS
AQTPTTILTLLEKVVKNHSSTQVTKGYVMTALLKLSDRFASSSLHPSDEE
KRKLEGLLALHDRSLQLELQQRSCEFMQVLAQGEGGREGGGVWDAKVRGE
VLGRIPALDEMMLRARRGGFREEGRDGRMERKGMSESAVVDILGMKGGTE
GGGRGEGGQAAVRDLLDLEDIFGGAPPAAAGNGSLRGGGSGGTSQIAPSG
LGNGNGGGGIGGGGGDLLSDIFSSSASISTSAPAAGPPPFDDVFGMQQQS
QQHHQPQEQPTAVAAALAVPAMAASPVMPRQAASSITAFDKDGLLITMDL
SKPDQGGDPASSLLLCRFHNQTGEAFTNLSFQCAVPKYVKLEMSSASGST
LPAHSAGAVTQVVKVSNSMLGQKPLQLKIKVTYTNAQGQPVTEMGTVANF
PDGH*
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Synonyms
Publications