jgi.p|Nanoce1779_2|589354, gene_4504 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589354
Unique Namegene_4504
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:763305..765814 -

Link to JBrowse

Properties
Property NameValue
TranscriptId589440
ProteinId589354
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:763305..765814 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000151ubiquitin ligase complex
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00540NO09G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589354mRNA_4504-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589354mRNA_4504Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|589354

>mRNA_4504-protein ID=mRNA_4504-protein|Name=jgi.p|Nanoce1779_2|589354|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MTPRPVIVRGRIRDEFQCPITAQILRDPVVAKDGHTYERSAISLWLETHK
TSPMTKEEISSADLVANLNLKRLIYDLVAEGGHGLAAKPTNAEEASQETA
FGFDDVMVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQD
TTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGA
MILVGKHQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPP
PSRNMDLVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSE
RGAYGGKTMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQH
RVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDK
GAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRF
AVSFESFLMEGVVPPRGEEGQEGRGEESGGGGGEGGISDGETLTPRSKQE
KEVEEESMDVS*
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Synonyms
Publications