jgi.p|Nanoce1779_2|589090, gene_4433 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589090
Unique Namegene_4433
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:582973..585247 +

Link to JBrowse

Properties
Property NameValue
TranscriptId589176
ProteinId589090
Product nameGlutamyl-tRNA Reductase, chloroplast precursor
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:582973..585247 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004764shikimate 3-dehydrogenase (NADP+) activity
GO:0008883glutamyl-tRNA reductase activity
GO:0050661NADP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0033014tetrapyrrole biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01210NO09G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589090mRNA_4433-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589090mRNA_4433Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|589090

>mRNA_4433-protein ID=mRNA_4433-protein|Name=jgi.p|Nanoce1779_2|589090|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MCPLRIFFALLQLHLLFMLGMSGSSAASASSAKAGGRNCPFRGWGGSKAT
NTVTTAAFLAPATLPRNIAAPRAPPSGAGTAVLDEGGFRTSSGLFVAPST
GSKVESSMRKRRVGAALKPLYAATVAPPISTGVVAAAAEKEEKAEGKKKR
KATSMTPLEVHVIGLSHHNAAVDVREKLSIPEAQWNDAANKLCESNVIAE
ACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQKVLRKNLFLLSG
EDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVVSRML
NSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCPQDLGKTFEESKVAI
IGAGKMSRLLMIHMASQGMKSVTLMNRGRERAETLAAEFPEMEVDIRLMD
ELWPVMHSHDVVYTSTSAQGCLLTKDNIQDAGLAPGKVIVDISVPRNVET
EVADIEGMYSYNVDHLKEVVDRNTATRKKQMLEAEDLLVEEMEKFRSWQF
SLGAVPALMKLQEKAETMRMEELKKASKKLNNLSDKELQTVERLTKGIVN
KLLHGPMSHLRATEDLEKNLVALKTLKAVFEL*
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Synonyms
Publications