jgi.p|Nanoce1779_2|639139, gene_4403 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639139
Unique Namegene_4403
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:505619..506861 -

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Properties
Property NameValue
TranscriptId639225
ProteinId639139
Product nameFormyl transferase, C-terminal-like protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:505619..506861 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0003905alkylbase DNA N-glycosylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006284base-excision repair
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01500NO09G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639139mRNA_4403-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639139mRNA_4403Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|639139

>mRNA_4403-protein ID=mRNA_4403-protein|Name=jgi.p|Nanoce1779_2|639139|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MATDMRHQSMTAMAEDEAAVNKQQTSPHPTPFPSPVVLSSSNNNSSSSTG
TTTAPIRGLLPSLLLPPHVESAPLPATVVLEKVRQYVETVIAYETHHLPV
VKCSKSGSHRIRTPESFRSDALTTARWLIGARLVRVLPCGTRLSGKIVEV
ESYLGSHDKGAHSYGGRRTPRLAPMYEAGGVAYIYHMHSCSCLNVIASEI
DDPVGVLIRALEPEEGIEHMLQNRLTARVLRGSKKKSLSSSSSSSSSSSI
VLPRVEDLSETERRKLQAELCAGPGRLCSALAVDHSMSGLDLIEGKVLFL
ERGEHVLASELMASPRIGIGYAGLWQAAPLRFSVLGSQCVSKPWPWRQAG
RGGGTERGKKEGGGEGGGRGGGGDGQRGRKRMKTIQ*
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Synonyms
Publications