jgi.p|Nanoce1779_2|625471, gene_4345 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625471
Unique Namegene_4345
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:344048..349116 -

Link to JBrowse

Properties
Property NameValue
TranscriptId625557
ProteinId625471
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:344048..349116 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02060NO09G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625471mRNA_4345-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625471mRNA_4345Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|625471

>mRNA_4345-protein ID=mRNA_4345-protein|Name=jgi.p|Nanoce1779_2|625471|organism=Nannochloropsis oceanica|type=polypeptide|length=1627bp
MPLKQGRKAANAATTSGKTMKVGLGKKGETTILSVVQQQVGKKSGTVAAS
STDLGSKRLAKKLEGLYERLVEIGFREAQIEQALTVCTLNSNGDIALESV
LDWLCLNVRPEELPAQFADPSVQEARTQPGTLGVGHAGATLSSEERASLV
ATREVDLDLGAHLAAVTRDEDGDEEEEEEGRNGDSKRWILEYARREAEAE
LAAKKAAQAQLTTAQRWESMTPEQKLELLEASYEEEKRKAKEARDSGREG
RREKAETEVRLKDIREQIYELKVVVGQRKREMAKLKNQLLAEMGGSEKLV
GGVGGGGSWAALMGGKGNQKVKEVEVEECDFGGMFEDDDDDSVVEEKTLN
TVPAALAKKEKEKELKVEQSIIDGLFGGDNESSDENDRPVQPRRPRTPPK
VLAAPMPAAPPSPDRAVPGAVIEVLTTVETTTKATALPSRPLPSQSQSPP
PEESFQSTSTSLPGVPKNWTGKTPRRHLEEYLQKKRLGKANFQKAAPGGK
GCVLTLRGIPERFESIGEFNTHGDSQHAAATRALYRLEPKLQLSRVLPPP
FREWWAEWQEAERKQREVKLAAVKRGKKDRIASLVQSMQEGVSLGGGQDG
KEHGSKEKGGGQSGNGSEGIGVMLTDNSEVSWEMQDVSLDEAQVEKGKEE
RMSTGAATAASSATPSSNVLNGSAHLQRLAAEKEDVELGKKLRQKFKEKQ
RRTKYQELARVRWELPVAATREEILRCVEREPVVVISGETGCGKSTQVAQ
YILEEALLRGEGHKLNLVCTQPRRVAAVSLAERVAQEMGDEGGAGGSGAL
VGYQIRMESKTSAATRLTFCTTGILLRKLQMDPTLQQYTHIILDEVHERQ
ALGDFLLVVLRDLVRVRSDLRLILMSATVNADLFCRYFGGCPTFTIPGRY
FPVEERYLEDALEATGCLIEEGSAYVRRKDRAQFKQATVEVSGRGGRSFS
QKLEWQEEEAETEGRRGSQWVNFLEECRDAGYSSRTLKSLGRVDEAIVNF
DLLEDLLRHIVEVEAEHVAAGEPGWRVDGAILVFLPGLGEIRGILERLRG
GRFFRDEHQYWLLPLHSALSSAEQQKVFQHPPHGSRKIIFSTNIAETSVT
VDDVVYVIDCGLVREIQLAKGRGGGRALVTTWACRASAKQRMGRAGRVGP
GVCFRLFSRHTYRKIMAEFAVPELQRTPLEELCLQIRANNLAPSCREFLL
KAPEPPESSAIDTAIRVLQEVGALSRMNPQQQQQQQQQLQQQREGAQSLG
REEEEGMLTPLGIHLAKLPLDVRLGKMLVFAALLQCLDPVLTIAAGLSGT
KSPFIAPMGKEAEARAIHAKFEVRQSDFLTMIQAFEAYRAACLKGGAGEE
HKFCVQHFLGKLTLREIADLKSQYLGLLVDMGLVAKPPHFGTRGGGVASY
RALEEFMASPTALRKGVGVNAEAQNTNLVLAVVAAGLYPHVAHAVLEPFK
KRPSFYHGPAAAPSSPVFLHPSSVNHGLPRFSSPWLVFHEKFHTTRAYIA
PTSVVSPYALLLFGGPLVVNHLANRVVIDEWIEFTCPARTAVLFREMRKR
LNEVLEVLVAKPLVGLTGKDSEQEAAVVDAIVSLLRGEEIKAAWVPGGPD
DPDHKQQLQQQEQQQQQQQQQKPRKN*
back to top
Synonyms
Publications