jgi.p|Nanoce1779_2|646260, gene_4322 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|646260
Unique Namegene_4322
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:292345..296595 +

Link to JBrowse

Properties
Property NameValue
TranscriptId646346
ProteinId646260
Product nameXRN 5'-3' exonuclease N-terminus-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:292345..296595 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00001753'-5'-exoribonuclease activity
GO:00045345'-3' exoribonuclease activity
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02280NO09G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646260mRNA_4322-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646260mRNA_4322Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|646260

>mRNA_4322-protein ID=mRNA_4322-protein|Name=jgi.p|Nanoce1779_2|646260|organism=Nannochloropsis oceanica|type=polypeptide|length=1247bp
MGVPKFYRWLSERYVSVNHVISDLSLLPEFDNLYLDMNGIIHACTHPNDQ
EVSQGLSQEEMMKNIWNYVDRIVTQIVKPQKLLYVAVDGVAPRAKMNQQR
SRRFRAAKDAAEAKEEAIKKGVVIDEGTVFDSNCITPGTEFMAVVDSHLQ
YFIRKKMKEDPLWRRLTIIYSGHGVPGEGEHKIMQYIRDLKASSSYQPNV
RHCMYGQDADLIMLALATHEPHFTLLREVIDFGRGRTGGGGGASVKTVLK
QTKDASFQLLHLSILREYLEFEFLRDLAEEEREEHLERIVDDFVFLTFLV
GNDFLPHLPSLDISEHAFDRLFELYGQHFKEWGGKGYLTNRGDIDIDRLQ
AFLVAIGHMEDSIFSAREEDVADFNARRRRTAKRFGTRGAPVPSEEELAE
KEAEAQSKYEIALAEAVKKGKVTRERAMMAVGLATPANSERGGAAGKGNG
DDGGKGEKVAEGASVVGKKNFRGRYYFEKLGVLDPEDSPVLKQLCKKYVE
GLQWCLAYYVKGCVSWQWFYPYHYGPLISDVNDLKGALGDLKFELGEPFK
PFEQLLACLPPASAKFLPKRYQFLMTSAMSPIIDFYPSDFAVDMNGKHNP
WEGVVLISFVDEKRLKQAIAEYCPETAMTTEEKKRNSFTKILTFRHSPAL
SFTVPSCNPSLFPDLTNSQTTVSPSAYSAASLTTFAPCLVPGTVIPSPGF
PSLKVLPIGDVKIEAIKVNVHGTESRYRTICLSLPMASLPGIETLAPEIL
GRPVYVNWPMMHEARITAVTDGTVECRLEQEAWEVLIVTQQKAYLYGRGV
VGLGGMDVGTVGMMLKVSPLQGLERCPATGATKKVFGVHEAEVPIQMAMW
SVPTADPRFIEQGPVPLQERLPLGAEVVFLREGKMRGQVGKVVGYGKDGG
KVKVETACGEPDRPIGLLARKALGKKYFDAGEVIRALNIDGRVLGKISGS
CFVDPGKYDLGLNLKVRGKWVLPDYVRRKAVVGVQENAAWSTQVDVVRIV
GSAEEGEEVGRGRDGGRGGYEREAGGVSWEYSEKAVVLLKAYMDAFPRMF
EELRRWPNEVAYDASRLLGTNYALELERIKTWLAAQETANMPRVPLTTEV
LSREAIRAIERSADELQAKAKKAAAGYVNIKTLEVAPEEVHCALAHQPAD
VARKLSGSNRPDLGDRVVNLVGLGVPFGLRGTVVSLHKHSACVEVLFDEE
FIGGTSLQGTCSPYRGKLLPWTALLKVTTEHAQRQQQQQQQCHHHI*
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Synonyms
Publications