jgi.p|Nanoce1779_2|588693, gene_4307 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588693
Unique Namegene_4307
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:258060..259252 +

Link to JBrowse

Properties
Property NameValue
TranscriptId588779
ProteinId588693
Product nameRibosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:258060..259252 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:00080975S rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02400NO09G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588693mRNA_4307-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588693mRNA_4307Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|588693

>mRNA_4307-protein ID=mRNA_4307-protein|Name=jgi.p|Nanoce1779_2|588693|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSRTGSSLVRRLGVSLTSTPSSTVTASNRRAITIVTAARRPPHQSQASPP
PPSANPLLSTRCLITGSSRSGSSAADSNEGASKKYVSPHNWMALVRDYGK
SDAVVGDAPMEIQTIQATARTPQETGSRYSQRAREKGHLPGVLYGPGVDG
DKERHLITVERREIEKQMRRLGDSIASTVFDLQLGQYKQRVLIRDLDRDP
GTALPIAVNFLRYRPGYPVEVPVCFVNEDLCLPLKRGGMLLSINRFIRVS
CEGETLPEMLMVDMTGVRNNQKVGLERVHFPSNVQPYEVSESFVLGVVKG
KNVAGTPGGPDSVADEVAATA*
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Synonyms
Publications