jgi.p|Nanoce1779_2|670318, gene_4140 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670318
Unique Namegene_4140
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:922665..924753 -

Link to JBrowse

Properties
Property NameValue
TranscriptId670404
ProteinId670318
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:922665..924753 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005667transcription factor complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00800NO10G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670318mRNA_4140-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670318mRNA_4140Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|670318

>mRNA_4140-protein ID=mRNA_4140-protein|Name=jgi.p|Nanoce1779_2|670318|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MEQILRCPNPDCRGIDLEYSEPDGATICMACHTIVEENAIVSSVEFNENS
AGGASTVVGQFVGPEMTKAYSSAGRGRRRFYARDSRDTTLNNGRRAIQQV
VSQLRLRQAFVDRACRLFRTAVERNFVQGRKTLCVVAVCLYMVCREDNSP
HMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLEL
GSEQEQTTVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAIYHEKPR
TYKDVGRIVRVSPDTIKKRVDEFEKTPISGMMSRDELANMALSEFDISPR
MGGGEGGREGAPRLVGEADPPSFTRAVKMKAAEALRKAQALRDEGKDAKG
RGESGKEEEEVTSVNGRESSTSSSSSAAATANSSRERGGSMAGARSRKRS
RRGGEGEGEEEERGKEDVGPLIREESEGGTEEVGLYKELMDQLLDEEEEQ
ANNRAVAADTERAAAQVGINGRINRGGAAGGGAVVTIAAPVVLGAAAVEE
IEEKEDEEVAAVVVAEEEKEEEEEVDDTAQYIRSEEEVEKLSKVWHEVHR
GYLEKQARKKAEEEAAKKRAEEDFNYRQPGQSNHQKKKAAAAVAAAAAAA
SVVGAGGSRAAGGMGGGGPARSPAEIAVSNHLAKKRISKKINYEAVKMLG
NDDDMDALPPELEAILTQGRD*
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Synonyms
Publications