jgi.p|Nanoce1779_2|554106, gene_3949 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554106
Unique Name	gene_3949
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_8:469392..473779 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554192
ProteinId	554106
Product name	tubulin folding cofactor D
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:469392..473779 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL004	ncniL004	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G02620	NO10G02620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554106	mRNA_3949-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554106	mRNA_3949	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|554106

>mRNA_3949-protein ID=mRNA_3949-protein|Name=jgi.p|Nanoce1779_2|554106|organism=Nannochloropsis oceanica|type=polypeptide|length=1353bp
MDDSTRTEGGGECDYEEASCESTHFVEQAEVLRRLEVLAGPTPPESITGE
LEWLQKVLDKYQEQSTLLDPALETMLVLTMGRARVIIMEWHSQHQPHQQR
RSSSSSCSSSCCTSSPLSFRFQVFDQPQLHGLFAFVYTLCRLRGYKTIVK
FFPHEATDLEPVLHALQSQDRQHHERWQTRYGLLLWLSMLVLVPFDICSI
DSGLENNGVTLVGALCDLAVEYLRDAGPTREAAAVCLAGLLKRPDMEAQQ
LAKFLTWAEGILTSSGEEGEDSEEGGERRAGGGAGGAGGAGGAEGRSHQS
DTFLLLGVLQTLAVLLKAGHRQNLLSFLPSLLHCLARLDPRDFGSQTLNR
KLKMKLLQRIGLAYLPPRVAAWRYQRGHRSLLDNLKKAKGEEGGEGGGAV
ATVQEQEKENEEEEGEISEDLEEIVEEILGGLRDRDTIVRWSAAKGIGRI
TSRLPLDYADEVVASVLMGFAEGASDSAWHGGCLALAELARRGLLLPGRL
GEVVPVVAKGLQYDVRRGHTSVGAHVRDAACYVCWAFARAYSPLVMREHV
PRLAEGMLMTSLFDREINCRRAASAAFQENVGRQGHENFPHGIDILTVAD
YFTLGNRQVAFLEVAPAVARFGPYTRVAIDHLAGVKLRHWDCSVRKLTSV
ALGKLVRLAPAYMSEEVLPFLLQEVDAVDLHRRHGALLGMAEVVLGLAAL
PFLGLGGEVGRGVVEVVPRLEQARLYRGRGGEYVRGAACRLIECVALAPV
TLGVKRQLRLLDSIDENLRHPVEQVQERAVAAVRAFTRSYFGVERPPSTP
SARLQARVVDKYLGLVEKGDNVAVTRGFVRALGVLPARLLLPSLDSILGL
LDELSREERKVGDEPDAETRRNALWTLVEITQTLGVQGRRKEGRKGWMNR
EQVQRVLGILLRSLGDYAMDKRGDIGSWVRMAALQGLASVVRVVREEGRE
GRREDGKIYIGERVVTAYGAADSMIIGNEDGENVGEAAGAAAFSSLLIDH
VLMTKIISAVLKQLCEKLDAVRECAGNALLQLLPLAHDAAAYPTIVAPPA
ATATSSRGSRKTKKKTFRGGAPSEIFPRVVRVLEIEQYHREVLAGMVVSI
GGLTESVVKASLGAVVEWAQQQRQKVEEGTDEGKGGVNLVGKLGVSMLEL
FDANVGEDRVVWPLLRSVDLFYQKGVFAAEEREEPMGLAWGLVDRLSREL
NGCRDFKKMLACLNVALHLLSPLSFYPHQESVHSGAAALRLVLLLLGHRF
PRVRKAAAEQLYTKFLLQDHLLASRPEAQEKVLELLTNTNWDGEDLRQVR
GVRDLMCGLLVLAVPGGKGKEEGGEEDGGRGKGGTGGEDLASYAALVKEM
GY*

Synonyms

Publications