jgi.p|Nanoce1779_2|585356, gene_3795 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585356
Unique Namegene_3795
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:6812..7968 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585442
ProteinId585356
Product nameBeta-lactamase-like protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:6812..7968 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G04100NO10G04100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585356mRNA_3795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585356mRNA_3795Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|585356

>mRNA_3795-protein ID=mRNA_3795-protein|Name=jgi.p|Nanoce1779_2|585356|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTLGADPLPFSCTSTSTTRKHGADDATTLGPPPAAAVEDPPLAPTNMDST
TPSSTPKGTLDVLFLGTGVSIAVPNMGHVLQEDCAICLRAHSEPTSKDRR
NNVSIAVLVNGTGEGPTDTNRDCILVDAGKTMRDSILRRFPAEGIKSVQT
LLLTHDHADATFGLDDLRDLQKKEHVEGSGIRLVDPPIDVFLQRATYATI
KKQFAYLVSATPWIDESRRLLLRNVPVLAWHPLSSDDAELHVTASQVPVR
TFPVLHGGDYVSLGFTFGRPGEFVYISDVKLIPPSSLAFLQSLPPIQTLV
LDCISTASTLHYSHFNMAEALATVDLLKPRQAYLTGMCCEVGNHEELNER
LLKMGYPHVSLAWDGMVVRGVKM*
back to top
Synonyms
Publications