jgi.p|Nanoce1779_2|584584, gene_3107 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584584
Unique Namegene_3107
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:669956..673225 +

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Properties
Property NameValue
TranscriptId584670
ProteinId584584
Product nameSnu114, GTPase of the U5 snRNP particle
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:669956..673225 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03000NO05G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584584mRNA_3107-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584584mRNA_3107Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|584584

>mRNA_3107-protein ID=mRNA_3107-protein|Name=jgi.p|Nanoce1779_2|584584|organism=Nannochloropsis oceanica|type=polypeptide|length=1005bp
MEDELYDEFGNYVGPGLDNSSDEEEEEEEEEDEEDMDEFGEGAESRQDGE
GGDGELALMDTNGVASTSIVLHEDKKYYPDMEEVYPGVNTVVLDEDAQGL
DEPIIQPIRPKKFSTLLAEKELPTTRYTPEFLTTLMETPTLLRNVCVMGA
LHHGKTLLMDLLIQQTQESPWDPAKEVRYTDTRKDEQERALSIKSTPVSL
VLEDTRGKSFLLNLLDTPGMANFSDEVSAALRACDGALLVVDAVEGVMMQ
TERLIKRALQEQLPIALVINKVDRLILELKLPPADAYYKLKHIIEEVNVC
IERHTPNALVKRPQRISPELGNVAFASAIHGWCFSLGSFSALYASYHNLS
NSFDTAEFSKRLWGNAYFDESTRSFRKKPPHPDADRSFVQFILEPLYKIY
SHTLGEDAPELTAVLRELGVRVRREDLHLDPKPLLKLVLSKFFGPVTGLV
DSLVNHVPSPVAAAAMKVELLYVGAQDSEAAVAMKSCDPRGPLMLHVVKL
YSAPDGESFQAFGRIYSGTVSAGQSVRVLGEAYTLEDEEDMAVREVTGLS
VGQGRYRLEVSRARPGNWVLLEGVDGPINKTATLTEVRGNDEAAIFRPLA
FDMPPVLKLAVEPLNPAELPKMVESLRKIRKSYPAVQTKVEESGEHVVLG
TGELYLDCIMHDLRHLHASLEVKVADPVVSFCETVRETSSLRCFAETPNK
QNQLHMIAEPLEAGLAKDIEAGAVSTDWDRRAVGDFFHSKYGWDLLTARN
IWAFGPDKQGPNVLINDTMPSEVDQRLLDGVKDSIVQGFQWGCREGPLCD
EPIRNVKFKILDATIATEPVHRGGGQVIPTARRVAYSAFLLATPQLMEPY
FKVEVQCPADCVDAIHLVLQRRRGHVKEDRPKPGTPFYTVEAYLPAIDSF
GFETDLRAYTQGQAFCTQVFDHWKEVPGDPLDREVVLHPLEPAPINSLAR
DFMVKTRRRKGLSEDVMISKYFDAEMLQSVANQQAEAAAAEMVGMNGGAG
IGYY*
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Synonyms
Publications