jgi.p|Nanoce1779_2|526405, gene_3096 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526405
Unique Namegene_3096
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:648749..651993 -

Link to JBrowse

Properties
Property NameValue
TranscriptId526491
ProteinId526405
Product namePRP1 splicing factor, N-terminal-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:648749..651993 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02900NO05G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526405mRNA_3096-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526405mRNA_3096Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|526405

>mRNA_3096-protein ID=mRNA_3096-protein|Name=jgi.p|Nanoce1779_2|526405|organism=Nannochloropsis oceanica|type=polypeptide|length=967bp
MPHHPQGAPTGYQAGFGRGAIGFTTRSDIGPARSAAPEVNFGQAPPGYVA
GRGRGMGDLARLQSEGGLPRDEGDRDKGDYSESNYDDFSGYGGALFGGDS
PYEDDDREADKIYQAIDDRMDARRKRRREEQLLETLKKARAERPKAGDQF
TDLKADLGNVSVEEWMSIPDVGDQSLKYKQRKRQEVFTPAPDHLIESQRA
ALVGATAPIDPRTGLQTPMSAGGSSSIAGLSQARETVLSIKLDKISDSVS
GQTVVDPKGYLTDLNSLKINTDSEVGDIKRARLLLVSLTDTNPKHAPGWV
ARARVEEQAGKIVAARKIIKEGCEACPESEDVWLEAARLYSAENARTILA
DAVRHLPQSVKVWLRAADLEPTEAGKKVVLRRALEYLPKSVKLWKTAIML
EEEEDARIMLERAVECVPHSVDMWLALARLETYEKAKNVLNRALKELPTE
GAIWITAAKLEEAHQKGDNVEKIINMALSILRQQSVVMDREHWLREAEAC
ERAGSPLTCQAIVRATIHMGVEDEDRYRTWTDDAESALQRGAVETARAIL
AFALQTFPGKRPLWSKACDLEKVHGTPEALEQMLKKAVTYCPQAESLWLR
AAKEKWLQGDVPAARALLTEAFKANPDSEAIWLAAVKLEWENSEYERARI
LLSKARQRVSTERVWLKSAKLERELGEVPTELVLLEEAVAKFPDFAKLYM
MAGQACDEVLQEPERARAYYQKGLRRCPHSVPLWRLAGRLEERVHGFTKA
RSMFELGRLRNPRNPELWVEAVRLERRAGNEKLVASLMAKALQEIPDSGL
LWAEEIIHSPRPQQKSKSQEALSKCPNDPLVFVAVARLFEATRKYAKARK
WYNQSVELNPDLGDSWAFYFAFELRHGSDEEKAQVLKKCLEADPTHGELW
TSVSKRVENWRLPKEAVLKKVVAKLQDAAAEEVIIPVIKMEPKVQVKMEE
QETVEGMPGGGTAEST*
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Synonyms
Publications