jgi.p|Nanoce1779_2|584404, gene_3057 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584404
Unique Namegene_3057
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:563880..566201 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584490
ProteinId584404
Product namethreonine dehydratase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:563880..566201 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004794L-threonine ammonia-lyase activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0009097isoleucine biosynthetic process
GO:0006520cellular amino acid metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02560NO05G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584404mRNA_3057-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584404mRNA_3057Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|584404

>mRNA_3057-protein ID=mRNA_3057-protein|Name=jgi.p|Nanoce1779_2|584404|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MLGGGRWRRMTRLPASLLMQRAAASSSGASVAITGSSATEDFNRDHTDYL
ARILNARVYEIAIETPLQPAPCMSKAIHNNVLLKREDLQPVFSFKLRGAY
NKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIK
VNAVRRFGGPTVTVKLHGKNYDEASEEALRLAREEGLTMIHPFDDPDVIA
GQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGIASYVKAVRPSVKVIGV
EAEDAAGMTTSLEAGHVITLDRVGLFADGAAVRVVGKETFRVCSQLVDEM
VTVTTDEICAAIKAGFQDTRSVLEPAGALAIAGAKKYCAAEQWRDKTIVA
IASGANMDFDRLRFVSERSDSTESLLSVRISERPGSFRQLYTGIFPRNVT
EFSYRFNSPDTADVIISFQSMPNMNREEDKQQVLENIRHLGTSLCLQSRL
MWFPTLYLLSVPLHSLSSPTTHVHTEFEVVDLSANEMAKAHARYLAGGRA
PHVKNEQLYRFEFPERPGALHAFLTDLSKGWNVSLFHYRNQGGDIGRVLV
GLQVPPEEFAEFQKWLETLSHLGYVYFAETKNPVYFQFLY*
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Synonyms
Publications