jgi.p|Nanoce1779_2|580208, gene_2394 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580208
Unique Namegene_2394
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:231332..232159 -

Link to JBrowse

Properties
Property NameValue
TranscriptId580294
ProteinId580208
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:231332..232159 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00770NO07G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580208mRNA_2394-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580208mRNA_2394Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|580208

>mRNA_2394-protein ID=mRNA_2394-protein|Name=jgi.p|Nanoce1779_2|580208|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MHFLFLCIHDPVTISRMSYSLHNTVCTHRPVLRPTRPIDKPIPPSHHLMA
LPPNQTLDKWKQAHNTSGGPIASTKQRRLQALLDEVDPSGTFRLDGEAEE
IVLYLIEQFMTSVATHSAQLARHRGATAIEHSDVAFTLLKQWNMAVPAIG
TSASRGGGGGGGGGKKGAKRKSR*
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Synonyms
Publications