jgi.p|Nanoce1779_2|579087, gene_2106 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579087
Unique Namegene_2106
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:825581..828115 -

Link to JBrowse

Properties
Property NameValue
TranscriptId579173
ProteinId579087
Product nametopoisomerase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:825581..828115 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
Vocabulary: Biological Process
TermDefinition
GO:0006265DNA topological change
GO:0006268DNA unwinding involved in DNA replication
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579087mRNA_2106-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579087mRNA_2106Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|579087

>mRNA_2106-protein ID=mRNA_2106-protein|Name=jgi.p|Nanoce1779_2|579087|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MAPKNKAEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAA
ESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASGGRKKYGG
GGGAAVATDKHDNDLKPDEKQLQVSAPVALPPKKKERGTSYYRVTCEDNG
CGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIE
VRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRID
VVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVTQYAR
RSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRP
LALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSP
AGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDG
INVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIV
STKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR*
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Synonyms
Publications