jgi.p|Nanoce1779_2|579008, gene_2088 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579008
Unique Namegene_2088
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:770015..773359 -

Link to JBrowse

Properties
Property NameValue
TranscriptId579094
ProteinId579008
Product nameProtein phosphatase 2C (PP2C)-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:770015..773359 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004722protein serine/threonine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0008287protein serine/threonine phosphatase complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03150NO04G03150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579008mRNA_2088-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579008mRNA_2088Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|579008

>mRNA_2088-protein ID=mRNA_2088-protein|Name=jgi.p|Nanoce1779_2|579008|organism=Nannochloropsis oceanica|type=polypeptide|length=757bp
MSLVGAGGEQVVRRLEKSASFLAAAAGGAAASLTSLIGSSPNQRPRRRNS
SSENDKKPVMAPTNERVATIMELAEKEETAVSHGNVGGLSLDPASIYDGT
ETLSRNHPVFQMIRQRSQVVGKASGEPFGPRKESGGTEVNSGTGGGGDGA
KVEELAYSGLSSTSLPSASLSGAEQHDSACGESYSKPVCTETRSNVCNHM
DAGGNTITGDDGGMLDVTAAAPFQEKAYTPFSPRKKMGYHHGYVEKLVLK
FTTYSQNNEESAFVIGKAGGTIGRDSNNTVSVPSDMTLQKECHAVIGHKA
GSFYLKNHGSTHCAAIRIGTEPGLRDWPLGLGATFSAGNSIFVVKELEGG
ELIVEVIDGPLEGERRKVGQRGATLGRSPDNTLSIADPELSRRHSRIEYD
DKDGKYYLSDVGSTNGTYMQLAGPYAKVFYLSLGDEIMVGRTGFSINRYD
YGISEERGRRKTMEDHTVVVQDLGVRALKRFGLAPQTFAAVFDGHGGEEA
SAYLARHLHVNLTETLEQLFGAMPGRKLPGTEEVDEMVKAAVLEAFHKTD
SDFLTNGNVDAGSTANTVLIMGRRVYSCNVGDSRTVISRDQKLLLCSNDH
KPAREDEARRIREAGGFIFQNRVMGELAVSRAFGDRELKKCMQEIMAPEE
LEQMSLRDAKSDGEDILVKDYSQPLVIARPEFIVSELIEKDDFVLLACDG
LFDVFPNAEVVQFVIEEMRQHHDAQRACENLSYTAIHQRIAHDNVSIVLL
VISKWW*
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Synonyms
Publications