jgi.p|Nanoce1779_2|628167, gene_1998 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628167
Unique Namegene_1998
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:531606..536637 +

Link to JBrowse

Properties
Property NameValue
TranscriptId628253
ProteinId628167
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:531606..536637 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02090NO04G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628167mRNA_1998-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628167mRNA_1998Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|628167

>mRNA_1998-protein ID=mRNA_1998-protein|Name=jgi.p|Nanoce1779_2|628167|organism=Nannochloropsis oceanica|type=polypeptide|length=1352bp
MPLRGREEEEQEEQGGAGEGGEGGEGREGREGGGAGGTVAEGAGAGTGAE
SEAERGEGGERERGARGGGGGGGGGGDGGKGETKPLPSCAAASVKLRPPR
KKSKRAVEAEPQWKAVPAWRADAAASATAAAVAAAAPLLPPLGASSTNTI
TRAQPPAAARVHFENFNMPGPPSTIDMATGRACTSPGTKWLAKTAAKEAV
LGASNEARLIGTVAVMVQVSPSVLQGLIAAKKVETVTRVFQNPKRKMEMS
WEKCSGEFSTPLGQLPLSRLLLALDNDKVRIPIKAHADMLETLWSLQNPQ
SSPWKRPLLRLCTTLTPHPSALLLDGRSSSKEQVNVHITFHVFVGRLIFE
LIANTDTQALMAGLTPNKKKTKQQQQQQPQTGGRKSKGTGKGKAVVTKSG
YNKQRKFSLGPTTLPNNPPSSTAARAPAPSAPASLWQVQRDYLFSLPGLL
HQAESCGYPIRDAQPPGLAVQLFDFQRSTLQWMLDRERGPGLNQYFWEKR
LWSKARGAGEGWKEEGEDDGEGFYYFPDAGELRLQRPPHCTGGLLCEEMG
LGKTLECLSLVLANPLKEKETKGRQAAAAAAARTTAAMMVGKKHGEKGEE
EWEGSTTMCGKVKASLIVVPATLLSQWLVEIQKTTHPGAVDAVVFIGVGK
ASFGSWSLRAVTEEGYSSPRIELEYLYTHQAVGQADVVLTTYDTLRNHRG
GRWLRQLHWHRVILDECQEIRTSTSMIAKLCSSLMATHRWMVSGTPLFVS
IDDLHGELQFLKVSPFSLQNDGFWEAKIGQPWKKRSEGEVGQQVLILLRL
LISVCMMRHSKGQVYVAGGRPIVTMPERSVTWVPVEGMSGSERFCYGYLE
VLAAEECRRLVEQALHAAAVGGGEEAGGVGGEGGGTEGGGAGEERGLLHS
AVVGAVAAAAADSGGAGGGEGGGAVSQRVLTREEQAQVLAQAIQHGGEGR
RTGRGRGGAAVGAHAKLKALLLMLQRVLLHPSLVSLAQLDSIKRSLQIQQ
RLLAVSLNAEKNKDSMIPILGIEEMLTRLQGRNAQGGLTRDVNRTWALHG
YQNEEAREKLEGLTLMELRARVAKEGLPLPIAWTQLPLRAAVGKGEERME
VWTYYEEERGGREGGKGGRKMVDELLAVGDVIRIGMNDEDYENGVKGLAV
EGGREGGGKGGQLENGVTGLIVREGDAEGILERGESGQVILEAAWANEEN
PKTVIYKRGPATRKKAYADLLMAKEKEMKGMTDQLHEAGFASIFAVLEGK
DLNCPVCLCTIGEPTVTQCCHVYCRTCILAQLEGAGGGGNVVSRCAVCRK
PVSLKTLMQLDTTSVERYEALEEWAGGREVGGGGGGGGGGGRGGKGGDGG
K*
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Synonyms
Publications