jgi.p|Nanoce1779_2|551406, gene_1838 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551406
Unique Namegene_1838
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:130507..133561 +

Link to JBrowse

Properties
Property NameValue
TranscriptId551492
ProteinId551406
Product nameAmino acid permease-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:130507..133561 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006865amino acid transport
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551406mRNA_1838-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551406mRNA_1838Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|551406

>mRNA_1838-protein ID=mRNA_1838-protein|Name=jgi.p|Nanoce1779_2|551406|organism=Nannochloropsis oceanica|type=polypeptide|length=689bp
MSKQRKAPLQPGATSPTEAVPLLSRTESIESWGLSNPHELLVSASSHQQH
SHELHRPPTFAPVGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEELAKI
EADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLM
VSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYI
ATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQ
IILVVHIFTLTLLCVCSAVYVICDPSTLRENLNTPFPDVQLGGIIRSGSF
ATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPM
ISFLALGVLPLARIVEDESVVLAKMAKHVGTWWLEVWVSLDAFLVLSGSL
LTAYVGVCGLISRMAADRCLPQFLLHRNKWRRTTHNIILGYLCLSAALVL
ILDGDVTDLSGVYSLAFLAVLLLFTFGTMLLKFKRPSLPREVTVSWVSVV
VAFIMIFIGLLGNLMGDPQVLLVFLAYVAAVGALVLGMFQWTKLLRFAVL
MLRGVCPGVSTQALQRELALAQAVPSVFFCKADDVYVLNKALLYVTANEQ
SRHLMVIHVHDKEKSPPPLLAKHVESFDTMYPKVKCSLLIIEGHFGPPLI
EFLHQELKVPVNMMFIAAPDETFKYKLDKLGGVRVITH*
back to top
Synonyms
Publications