jgi.p|Nanoce1779_2|285956, gene_1815 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|285956
Unique Namegene_1815
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:72876..75195 -

Link to JBrowse

Properties
Property NameValue
TranscriptId286042
ProteinId285956
Product nameMur ligase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:72876..75195 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0009396folic acid-containing compound biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016874ligase activity
GO:0004326tetrahydrofolylpolyglutamate synthase activity
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00340NO04G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|285956mRNA_1815-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|285956mRNA_1815Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|285956

>mRNA_1815-protein ID=mRNA_1815-protein|Name=jgi.p|Nanoce1779_2|285956|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MRRNSSTSLASSSPPSSSSSSSSSLSLSLAAAVAVGATVATATLYFYHRH
RHTPKHREVCAEDRAYLDALHHIALSLGVPRLRTPISPQQMDDDETRYAR
RDIFFTHFFSNVLGGDQKYYKFVHVTGTKGKGTVCELVRCGLIAHGKRVG
TFTSPHLHTVRERIRVNDILISKADFVRLWAKVQKALAGYSTEGGGGHWA
NFFDKVLGVALAWFVEQRVEYIILEVGIGGRYDPTNFIARPAVCVVTSVS
KDHTEMLGESLEAIAWQKAGILKGGGDTVCLTPATPAQDPAVLRVLRAEA
EKVGCYIEEVILDPPSSPTPPSVSSPPSSRTSSPPPSIAPSPPAPHTIRG
VEVHPENFALAKGVLKTLLLSSSRGGWGGGKGRSRTVLMRRGWETRAFWP
GRFELFPLQLEGGREGRRTGRNGIRLHKRRPREALLLLDVAHNVDSVAKL
LDEVRRRFFPGYPASFSSFSSSSSSSTTIPTARVQGGCALWVLFGTGNDK
DAKGMLDILLSSSSSSCPSSPPSSSTSSSGLKPLDRLIFCQAKHPRARSV
DELATFLPPSLLPSLDNPPIEPKRRRRTRTKRRKGDERKTEVTILSPASG
ATPDLALAELLEDLDPKRGGGGGGGGGGRRRSAGGMRVILCGECREGLPG
TAPAGNAAGDRLGL*
back to top
Synonyms
Publications