jgi.p|Nanoce1779_2|572841, gene_1599 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572841
Unique Namegene_1599
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:1044487..1047195 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572927
ProteinId572841
Product nameHaemolysin-III related-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1044487..1047195 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04030NO03G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572841mRNA_1599-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572841mRNA_1599Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|572841

>mRNA_1599-protein ID=mRNA_1599-protein|Name=jgi.p|Nanoce1779_2|572841|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MFCPTPFVLSSPLWQPYGPRIVLKRRVLQKHHVTFTSTRVPRKPCTNHHH
IIIIPIHLRRFKRRVATTAMGDASAASVHLLPPKANGASGAASASSAGAS
SPSPSALLPIPCSHSSHGNAEGDEDTTHYIQNCLHYHMAIDPSVVITLRT
RWSVMQPTKSFCEGSLLPLAGILDHNKFIRRLHLSGTGMTNVKAGAGNGD
SNARILHQVLANNNCIETLDISNTGIDDSGLAEVCEGMKKNAAVTTLNVA
RNCFSAKGALFLEAMLESNISLKYLDISRNALGFNCISRLQCCAKAKNVE
MNVEGNYVFEEILNSLTHGLGFIASVVGTILLMSAASAPGTTPYHWWSCL
LFSLSLMILYISSSLYHSMFMLPHAKDILQVMDHVGIYLLIAGSYSPFMM
IALHHSPRANVLLLLEWVTAGGGVCVSIASSGVGVSKQETNLVEVAIFLV
MGCAAFAVWSDLVMSLPETALHMLVGGGMAYIFGVIFFILGEIKPIYHMV
WHLCVMLGSVLHWLCVYHFVVGIDMG*
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Synonyms
Publications