jgi.p|Nanoce1779_2|575212, gene_1072 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575212
Unique Namegene_1072
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:1152490..1154547 -

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Properties
Property NameValue
TranscriptId575298
ProteinId575212
Product nameprolyl 4 alpha subunit domain protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1152490..1154547 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004656procollagen-proline 4-dioxygenase activity
GO:0019798procollagen-proline dioxygenase activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Vocabulary: Cellular Component
TermDefinition
GO:0016222procollagen-proline 4-dioxygenase complex
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04790NO02G04790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575212mRNA_1072-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575212mRNA_1072Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|575212

>mRNA_1072-protein ID=mRNA_1072-protein|Name=jgi.p|Nanoce1779_2|575212|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MKHLWTRSPRLSVLVAAAAFLVAHAAAALKAVTEVVNDASVGLDVYWRNE
AEGGAYSLIMTVARGARSTVNTFQGHGFLVTAQGTAVSPSDRPNFIQQLE
KQALRVRGNSREDLAFENLDISKIMSGTKDNTKKRNATGFTSTSSEDEAK
AALSGESQVFVRNDAGKTVYVYWLKPVDGLYILVGTMFDGQELSFDSFIG
HDMHVSAFSAVEAAKDDQAPNLPVRRSSHTLRVLPSNNDREDVVLHMDQS
PDNLKKKKEKKSPAKASIPRKTQPKESSPPPLTKPAARYLKTVTIEQTKQ
AIHTCQGEATCIVDALYRGKIAKIQNSIQNAMTKRDDMEDRYRDYACLNH
ITMGPEEIETSYWNYTDEGVEAAMAATTACENDESGMCKDSSSSLSSSSF
NGTQKQIRVDHYFDTDKGNAKIYLLHDIVTPTECAELQKRATGRLAPATT
TGDIPGEKVVSATRKAKVAMVRPDLDSDAHDILAPLQRRLFAFVNEHGGG
GYENFGLAGQEPFNVIMYNASGDEYRPHCDGYCDSSKFARGGRAATVVLY
CEEAVRGGQTSFTAADILLKGQAGQAVFFHYRGEDGYMDSGYTKHSGCPL
VEGNKWIATQWIRGGVSAAMPWYYFSPTGDQDLAAGNVFSQDPRYM*
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Synonyms
Publications