jgi.p|Nanoce1779_2|611449, gene_10592 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611449
Unique Namegene_10592
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_56:63314..71748 -

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Properties
Property NameValue
TranscriptId611535
ProteinId611449
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:63314..71748 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0031491nucleosome binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0043044ATP-dependent chromatin remodeling
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL078ncniL078Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05130NO05G05130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611449mRNA_10592-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611449mRNA_10592Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|611449

>mRNA_10592-protein ID=mRNA_10592-protein|Name=jgi.p|Nanoce1779_2|611449|organism=Nannochloropsis oceanica|type=polypeptide|length=918bp
MRSMEEKDEDAALMKTATSTGRVTRLQAQPKSIMSGTMRPYQLEGLNWMI
KLHDNGINGILADEMGLGKTLQTISLLAYLREARNMQGPHVVIVPKSTVG
NWMREFAKWCPEIKAVKLLGTKDERADMVMSYLHSKGQRRPFNVVVTSYE
GVLKERAALEKIQWRYVIIDEAHRIKNEKSSLSRMVRMFKSTFRLLITGT
PLQNDLHELWALLNYIMPDVFDSSDTFDEWFNIGKAGGGGGGGSMSGGSG
EEGGSENVIRKLHQVLKPFMLRRVKGEVEKDLPPKKETKLYIGMTEMQRE
WYRKILRRDGAQLNMLGGTDRLRLLNILMQLRKVCNHPYLFEGAEPGPPF
IDGPHIWMNCGKMVLLDKLLPKLKAQGSRVLIFCQMTRQLDILEDYLRLK
GYLYCRIDGSTKGEDRDNAVERFNQPNSPLFSFLLSTRAGGLGINLATAD
TVILYDSDWNPQVRVFRFITEGTVEEKIVERADRKLFLDAAVIQQGRLAE
KHNSVSKDELLHMVKFGADEILNAGGKGFTDEDIDLILQKGEAKTEEQTA
KYQTNVQHNLAKFTLLDDTEERNLFEFEGEDYSNKRKDGIVFDMGQRERR
PTMNYDVDSYYRSALKGGVAPKGEREAGTKKQRRLALPEHQFFNRPRLQE
LHNKEQALHLKRQARLAFVKELRAGRKAAVGQLTEGRGGGGQLEEEVTDG
RFELALLRKAGFRDWSRKDLRVLVTAIERFGRSDRASILRETAAETGKDE
ADVTLYYDTFTARIKELPNWQALHDRIRRGEARIARNKQIKEALERKGKQ
QQGRLWTDEEDTFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRTS
FELNKRGDTLIKLIEREEAEADGRKVSNEGGMERERILLDVYMEYIFNTS
FSFSLRSLSLFCSPFPA*
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Synonyms
Publications