Naga_100016g48, gene5373 (gene) Nannochloropsis gaditana

Overview
NameNaga_100016g48
Unique Namegene5373
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:288303..290532 -

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100016g48
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:288303..290532 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0007165signal transduction
GO:0006950response to stress
GO:0016043cellular component organization
GO:0009605response to external stimulus
GO:0009607response to biotic stimulus
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL018ngnoL018Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00940NO11G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5560rna5560-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5560rna5560Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5560

>rna5560-protein ID=rna5560-protein|Name=rna5560|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MISRGLLAVGLLTASTSATVYFTENFDDKWESRWVVPSKWKAAEEIGEWA
HTAGEWFGDAADKGIKTSQDARFYGLSAKLAKPFSNEGKDLVLQYVVKHE
QRLDCGGAYIKLLGPELDQASFGGDTPYQIMFGPDVCGSTKRTHVIFNYP
EAKGEDKNLLIKTDVPTRTDQLSHLYTLHIMAANNSFNVLIDGESVREGS
LEESWDFRPPKTIPDPEQSKPADWVDEEMMADPADVKPEGYDDIPATLPD
SEAVQPEDWDEEEDGVWEAPMVDNPDYKGPWSPKMIPNPDYKGAWEHPHI
PNPEYSPDPKLHARATEVTAVGFELWQVKSGTMFDDIILTDSLDEATEYA
KETFWKKQEGEKAMFEKAEEERVEKEKAEREEMKKKAEENGEPFEEGDSP
FSVSDMEITEDEDEDDEDWEDEEEEDDENSFTMEL
back to top
Synonyms
Publications