PDH, gene4957 (gene) Nannochloropsis gaditana

Overview
NamePDH
Unique Namegene4957
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:218337..222865 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100130g6
Gene biotypeprotein_coding
GenePDH
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:218337..222865 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL015ngnoL015Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL013ngnoL013Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03340NO10G03340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5136rna5136-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5136rna5136Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5136

>rna5136-protein ID=rna5136-protein|Name=rna5136|organism=Nannochloropsis gaditana|type=polypeptide|length=826bp
MSPFVFIRLIMRISMRLALFAGAGLATTSTAFLNPSSFLSTTSRPIQETT
RATPLQAAPAATAARVTATDRPTYNEDPEAMARGQMRPRPEDLGWEQVKA
QLNTAFGLTENSLGKYDTVGKADLLKAYTMMEVSRQFENACNQAYMQGKI
RGFMHLDNGQESIPALVSDAIKAGDIKHSYYREHTHALASGVPAENVMAE
LFAKVDGTCKGAGGSMHIYDVSKNFQGGWALVSEQLPYAVGAARSILLDR
ELDTEGKKDDDRITIVFIGEGGAQNGRMAECLNAAAKEGLPILFLVIDNG
RAINTFTPDVAANSDVFKAGMHYGIPGVKVDGQNMADTLKTGRAVVDYVR
EKGPAILQVHTYRFTGHSPADPEHERGRKEEKRWARAEADPIVIFEEVTA
PANGITEADLEACRAEAKATVKKAVEFADASSPPPAGLAKELEYPDAPNT
DYNLRAPPAGAEAITKKTVDGAALAACKEYIALLRSNSEKNMLTIGDAVN
LAILEEMVRDPTTTIHAEDLQAGSSYNIPKLTQQTFGKLRAADEIIDEGH
FIGKALGEAMNGYRPIVELMNTNFGIYGLAEISSAGNTYATTGGQFLMPM
TIIGAGGTAPNQALGAEHSQPFHAYVMGIPGLKICTAASPYAAYGLTKSM
IRDNGPGILFLPVKLMKEIKGNAPVDQCLPMNKAVALSAASDAAVLAGKA
VTVLTYLHGVKESQIAQAAIAERDPSVEIDLIELRSLKPLDMDTIRASLS
RTHKLAILDESTSSGGVGATISALVSEQCYDELDAPVKRLCMDDAPVPYA
SSMEKAVVKRSTDLVDAVFDLVAGRV
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Synonyms
Publications