LHCP28, gene4745 (gene) Nannochloropsis gaditana

Overview
NameLHCP28
Unique Namegene4745
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:660438..662296 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100168g13
Gene biotypeprotein_coding
GeneLHCP28
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:660438..662296 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0016020membrane
GO:0009579thylakoid
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006091generation of precursor metabolites and energy
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL007ngnoL007Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL006ngnoL006Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02640NO12G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna4914rna4914-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna4914rna4914Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna4914

>rna4914-protein ID=rna4914-protein|Name=rna4914|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MKTAVLFLSGLVGAQAFLTPNARVPAATKMEAIKAGKGAKAGKAATANNY
LKEVEPGSGPLGKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGL
SKIFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSE
LNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERK
KVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVG
FTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILSQTVEWAQSQ
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Synonyms
Publications