Naga_100015g46, gene2993 (gene) Nannochloropsis gaditana

Overview
NameNaga_100015g46
Unique Namegene2993
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:750448..755441 -

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100015g46
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:750448..755441 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL127ngnoL127Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02280NO09G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna3115rna3115-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna3115rna3115Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna3115

>rna3115-protein ID=rna3115-protein|Name=rna3115|organism=Nannochloropsis gaditana|type=polypeptide|length=1638bp
MGVPKFYRWLSERYVSVNQVISDLSLLPEFDNLYLDMNGIIHACTHPNDQ
EVCQGLSQEEMMKNIWNYVDRIVTQIVKPQKLLYVAVDGVAPRAKMNQQR
SRRFRAAKDAAEAREEAGKRGVSVDEATVFDSNCITPGTEFMAVVDAHLQ
YFIRKKMREDPLWRRLTIIYSGHAIPGEGEHKIMQYMRDLKASPSYQANV
RHCMYGQDADLIMLALATHEPHFTLLREVIDFGRGRAGPGGSSANTVIKQ
TKEASFQLLHLSILREYLEFEFLRDVPEEEREVHLERIVDDFVFLTFLVG
NDFLPHLPSLDISEHAFDKLFELYGEQYRTWEGQGYLTNRGEIDIEHLQA
FLDAIGAMEDDILKAREEDVADFNARRRRTQKKFGVRGAEVPSEEALAEI
EAEAQSKYEMAMAVAVKKGEISKERARVLLGFAPIPVDKEGSGPDGGGTK
KGKAEQALSVPEPVKKNFRGRYYFEKLGVLDPECSPVVQDLCKRYAEGLA
WCLAYYVKGCVSWKWFFPYHYGPLISDVKNLAGAVGSLKFELGEPFLPFE
QLLSCLPAASAKFLPRRYQFLMTNPTSPIVDFYPEEFKVDMNGKHNPWEG
VVLIPFIDETRLREAIKKYCPESSLTSDEKKRNSFGKILTFRHSPALSLT
VPSCNPALFPDLTHSQTTVTPSSYSPASLTSFAPCLVPGTVIPLPGFPSL
KVLPIQEVEIKALKVNVNGSDSRYRTICLSLPVTSLPAIETLAPEIVGRP
VYVNWPMMHEARITAVTNGKTAWDVFIEKEQKAYLNGRGTVGQGGVDLGK
VEMTLKVRALQGLERCPATGSTKKVFGTHEADVPIQLAMWSVPTADPRFI
EQGPVPLLDRLPLGAEVVVLEEGKLKGMTGKVVGYNKGGQEQVKVELACG
EPDRPIGLLARKAFGNKFFDAGEVIRALNIDGRVLGKVTGSCFVNPGKHD
LGLNLKVRSKWVLPDYVRRKAVAGAGSGKAWAAAVDVVRIVGSAETGEEG
DTEPGGVPWEYSEKAVLLLRAYMDAFPRLFEELRRRPNEVNYEGQRLFGA
NCAAELEKIRTWLATQVTANMPRVPLTTQVLSREAIRAIERSADELQAKA
KKAGAKYVKVVAVELSPEKVHCALSHKPSDVARRLAGKPELGDRVVNLTG
LGVPFGLRGTVVALHTQTACVEVLFDQEFIGGTSLQGTCSPYRGKFLPWS
ALLKTTAAGGTLDAKREQAVHEGGDQAMGGTVRGKSGGGRQPQQQKERTG
KKEIEKGGITPIPVKILTREQQLPQQEPQQRRKSQQAPSVGSVSASCPPM
STGSNQMGRDLLASLTGKEKGMDSISRPNAAMTVRNGKRVDPRNAMEVAV
RVHTSKPVVSLPLVETGRDKEEGGGDVRRAGAKDSFGRHSKAKGPDGTIG
FQRRRSREAAGTIAERIQEEEAKAKQDDMARVMGLLSLQKEGDNLQQETL
VTSKSSEVGGATNNLKSILNLTGGMKGSSSSNPPTASNSVAVHHQQPPPA
YPYPAGPGFLGPNGFYPTPPPPGYYFHPHMPGTSMSSMMPHHLVAHPQSP
VIPRRPRERRSSNAEGTGGGESLQAGGYGETSSDGGGATNGRGVISKGSF
IMPSQVLRTGNSSKKGISGENVATAAAEKTGVTSGTNS
back to top
Synonyms
Publications