Naga_100125g12, gene2890 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100125g12
Unique Name	gene2890
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:469314..471009 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100125g12
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:469314..471009 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL127	ngnoL127	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G01150	NO09G01150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna3011	rna3011-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna3011	rna3011	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna3011

>rna3011-protein ID=rna3011-protein|Name=rna3011|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEA
KRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPL
CGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESS
AYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGS
GYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTL
SKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPAD
RPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGE
MDRSGRIALERSCTDEDESAGGGKCGKSEASFGLWLKGCKVVLFCISGTM
FWLVEHSLLERSTVPSRHCGSVFLDRKISFSTRKLRF

Synonyms

Publications