Naga_100034g22, gene2838 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100034g22
Unique Name	gene2838
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:354000..358404 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100034g22
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:354000..358404 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL127	ngnoL127	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00680	NO09G00680	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna2958	rna2958-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna2958	rna2958	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna2958

>rna2958-protein ID=rna2958-protein|Name=rna2958|organism=Nannochloropsis gaditana|type=polypeptide|length=1390bp
MQDAQADSSDLNRRSLRSSGNPLELIELIMAICQDPRHASSTAVKRQLEC
IKMRTARTQHVATSEKPRCDPELEAVYENLGRLRENERRHEHVYAELKQA
NLALTKEKQAITIHAHTYEKKATALALQLEAAQREVAEANCAKRRHAEQV
KAELLAHVNELEEVERARETALRSELATAKQESDEWRRQAETVKEEIVAM
GVADRDKHEALKSVQAELLILSEEYKNLSQQIALEKKEVEAAQQECVVLR
EADKESRRAMKMREDTLRMELATASDEINRLKDLYKSTIDSVQRGDMSIT
ALQKKLEEANGEVEALRAATEEQRRELMSLRRECARTKIELNNAQADAST
RMTALAQDLTDAKEDANRCRSLLSATSEEVSKGQSLLEISMEETQTVRES
CKDEILLLEEEVKRWKEAAERAQGEVTEKSSVLSSLHEEHYRVLAESQDS
RDKASQWQKTAEAAKDRIQLLDAEMLRKESVLADTEMRIEKLAAEVRNAH
DEAARFEAAAELVKGESTSRFLQLQNSLEEMRAREVTLTDELATKMEELR
ECQAIVEARGKEMAMQRYQATEKESETRSALDATEARVVVLEGEKKRYEK
ELEHWRFSAETAERKYESLLEENQNIQSSFERRIQDEFSRANILETELIA
TKKDLVNLKSVLESSDGQKREKEIFLEKSLAETRSIGKDLQVQLVEAEQK
VFHWRESTQAAHSESNEVRSALDEARTQIATLEKDLELAQHTTIMVKSAA
QPALMKAGSTDSPGQAPLYREPGVDSESSAMDLGVAPIDSEKNELGQFER
KRRLYEEQEREPAFADEITVPKDKWLRLKADLDFLRDENAALQSKLKAVE
GKGEAKLSEGKLLGKLQRMEWSSSSWKPPTTFPGGDPTDFFFVEIGTWRI
RAGWVEVGTSKSFQTVEFPCIIARPSKASADLTTIVQHASIKADAMYGRF
REMGVFIGKDAWYCAFDHPDPVLRGSLKLEAPFDRDRLIRPADLKLLLKY
VFEKCEVCLTKTPLVVTYKPTSTLKEREEVVEMLFEYCEASSVRFLNEAT
MLSSLANVVTALTIDLGEDTTRVVPIYEQMILEKGVETAALGGIDLTKYM
AYMLLSRRNEVYSSLVERKMLEVARLIKESHAYVAADFNCERGRYGTFER
EKIDVMKFHRAQIATEESVVPGRRLDMASVREPDGKSNTSRDGRGSVEVR
QPLKNGEELVLSVGCERFHCGELFFRPKLFPDIGQTTSVIDLVMKSLASV
DKELWPLLLSHVLIAGQSSRLPGLVERITKELKDSLPPEFAGILNINHLE
VALMGGNVEEERRIEGGETKQYLKEEKTHIPDSDEIVQNMTAVQNMTAVS
RGALARAAEIISERGSWISAEVYNIDGPQAIEDPAYICTP

Synonyms

Publications