CPC17, gene2400 (gene) Nannochloropsis gaditana

Overview
NameCPC17
Unique Namegene2400
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:550932..553105 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100004g154
Gene biotypeprotein_coding
GeneCPC17
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:550932..553105 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0009987cellular process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL118ngnoL118Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02300NO05G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna2511rna2511-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna2511rna2511Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna2511

>rna2511-protein ID=rna2511-protein|Name=rna2511|organism=Nannochloropsis gaditana|type=polypeptide|length=490bp
MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPV
FHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLS
EESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNL
RMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGY
IINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFH
ECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPY
KVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGA
LATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSS
SGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSN
LQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGSER
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Synonyms
Publications