EWM24490.1, cds6184 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|585105971|gb|EWM24490.1| (short-chain dehydrogenase reductase [Nannochloropsis gaditana]) HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0 Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0
Query: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQVSDNPSPHPPSRFDCPVRTRTSQLARSVNLFKACHTFFFPHIYPLFTLAFFWGGPWLSTPILSCPTHLFSGL 353
MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQVSDNPSPHPPSRFDCPVRTRTSQLARSVNLFKACHTFFFPHIYPLFTLAFFWGGPWLSTPILSCPTHLFSGL
Sbjct: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQVSDNPSPHPPSRFDCPVRTRTSQLARSVNLFKACHTFFFPHIYPLFTLAFFWGGPWLSTPILSCPTHLFSGL 353
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|585105970|gb|EWM24489.1| (short-chain dehydrogenase reductase [Nannochloropsis gaditana]) HSP 1 Score: 578.941 bits (1491), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQ 281
MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQ
Sbjct: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQ 281
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|553192919|ref|XP_005855670.1| (short-chain dehydrogenase reductase [Nannochloropsis gaditana CCMP526] >gi|422293388|gb|EKU20688.1| short-chain dehydrogenase reductase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 491.115 bits (1263), Expect = 1.534e-171 Identity = 261/342 (76.32%), Postives = 266/342 (77.78%), Query Frame = 0
Query: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKL--PGCIVFTSSVSGYMPSPFSSMYGAT-------------------------KAFLSQ----------------------------------FAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQ 281
MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQ L P F + +MP FSS++GA+ FLSQ FAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQ
Sbjct: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQVSLISPSSSRFHTV---FMPIIFSSVHGASVVPPLLHPRTHLPPDLGWTAHMPFRAIFLSQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQ 339
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|676389129|ref|XP_009037843.1| (hypothetical protein AURANDRAFT_27825 [Aureococcus anophagefferens] >gi|323451329|gb|EGB07206.1| hypothetical protein AURANDRAFT_27825 [Aureococcus anophagefferens]) HSP 1 Score: 336.65 bits (862), Expect = 1.298e-111 Identity = 163/271 (60.15%), Postives = 207/271 (76.38%), Query Frame = 0
Query: 11 LPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKT-HQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYD 280
+ +PVFL+ + +AAPT +W YFLPL++++L G QDLKKKY A WA+VTGGS+GIGRAI + LA QGLNV V ++ D L+ V EL +A+ QEF AVGV FAPG YL KI +AT D DVQI+FNNAG+I+TGFFD+QPL K L N+ECNATAAV ITHHF +++K L GCIVFTSS S Y+P+PF+ +YGATKAF+SQFAA +AVE++ +GIDV +HPSPVAS FY K H+++ ++ KK AV P ELP +IF+ IGRC D
Sbjct: 1 MAVPVFLLYI-LAAPTALWLAAYFLPLLYIRLRGVQDLKKKYGATWAVVTGGSTGIGRAICEELAKQGLNVVVAALPDKFLEPAVAELSAAYKGQEFVAVGVSFAPGADYLEKIKAATADKDVQIVFNNAGFIVTGFFDTQPLGKHLVNMECNATAAVAITHHFAAAMMRKGLKGCIVFTSSASAYIPNPFAIIYGATKAFMSQFAASIAVELQCKGIDVCVIHPSPVASNFYNKVEHKIDSMESFKKLAVDPSELPREIFASIGRCVLRD 270
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|298706063|emb|CBJ29173.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 328.946 bits (842), Expect = 1.564e-108 Identity = 152/260 (58.46%), Postives = 200/260 (76.92%), Query Frame = 0
Query: 22 IAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEK-THQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYD 280
+A PT+VW TYF+PL+ + +L PQ+LKKKY A+WALVTGG SGIG+A+V+ LA+QGLNV +VSMDD L +T + S FP QEFR VG F+PG Y+ KI + T DI+VQ +FNNAG+I+TGF++S KQ+AN+ECNATAA I+HHF+ ++I++K GC+VFTSSV+ Y P+PFS+MYGATKAFLS AA L+VEV+ +GIDV+SVHPSPVAS+FY H +E++D K++AV P+ LP +I IGR W D
Sbjct: 12 LAVPTIVWLVTYFVPLLLVAVLPPQNLKKKYGAKWALVTGGGSGIGKALVEELALQGLNVVIVSMDDQFLADTFALVSSKFPGQEFRKVGATFSPGVDYMDKIKAVTSDINVQCVFNNAGFIVTGFYESSAEGKQMANLECNATAAAKISHHFVGRMIREKQKGCVVFTSSVAAYCPTPFSAMYGATKAFLSNLAASLSVEVRCKGIDVLSVHPSPVASQFYSNLDHTIELMDKAKESAVPPNVLPREILKSIGRVVWRD 271
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|1210514714|dbj|GAX26193.1| (hypothetical protein FisN_16Lh008 [Fistulifera solaris]) HSP 1 Score: 313.153 bits (801), Expect = 4.473e-102 Identity = 148/259 (57.14%), Postives = 194/259 (74.90%), Query Frame = 0
Query: 23 AAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEK-THQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYD 280
A PTV W Y +P I+M +LKKKY A+WALVTGG SGIG+A+ LA QGLNV VVS+DDD LK T++EL+ FPKQEFR+VGV FAPG Y+ II ATKDI + I+F NAG+++TGF D P+EK LAN+ECNAT+AV ++HHF++ L+Q K GCIVFTSSV+G++P+PF++MY +TKAF+SQFAACL +EVK GIDV ++HPSPVAS FY K H+++M++ K+AV P+ + + + IG C D
Sbjct: 30 AFPTVFWLVAYLIPQIYMAFRPVPNLKKKYAAEWALVTGGGSGIGKALCFALAQQGLNVVVVSLDDDFLKTTMQELKQQFPKQEFRSVGVNFAPGVKYMDAIIKATKDIHIPIVFCNAGFMVTGFLDQAPIEKLLANIECNATSAVNVSHHFVKILVQNKQKGCIVFTSSVAGFIPTPFAAMYASTKAFVSQFAACLHIEVKPLGIDVCAIHPSPVASNFYHKLDHKVDMIEAAAKSAVTPESVTNDMLRSIGPCALRD 288
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|219112727|ref|XP_002178115.1| (short-chain dehydrogenase/reductase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411000|gb|EEC50929.1| short-chain dehydrogenase/reductase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 312.768 bits (800), Expect = 5.266e-102 Identity = 147/269 (54.65%), Postives = 202/269 (75.09%), Query Frame = 0
Query: 14 PVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEK-THQMEMLDMVKKTAVAPDE-LPSQIFSGIGRCHWYD 280
P+ ++ + A PTV W Y +P ++M + DLKK+YNA+WALVTGG SGIG+A+ +LA QGLN+ +VS+DD+ LK+T++EL +PKQ FRA GV F+PG Y+ KI +ATKDIDV I+FNNAG+++TGF D P+ K LAN+ECNATA+V I+H F+QKL+ KK GCIVFTSSV+G++P+PF++MY +TKAF+SQFAACL +EV+S GIDV ++HPSPV S+FY H+++M++ +AV+PDE L + IG C D
Sbjct: 20 PLTILAMIFAFPTVFWFVAYLIPQLYMVVRPVPDLKKRYNAEWALVTGGGSGIGKALAFKLASQGLNIVIVSLDDNFLKSTMRELAEMYPKQSFRAAGVTFSPGVDYMAKINAATKDIDVPIVFNNAGFMVTGFLDQTPIGKLLANIECNATASVNISHFFVQKLVAKKAKGCIVFTSSVAGFIPTPFAAMYASTKAFVSQFAACLHIEVQSLGIDVCAIHPSPVKSQFYTNLDHKVDMIEKAATSAVSPDEKLADTMLKSIGVCALRD 288
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|1210515902|dbj|GAX25171.1| (hypothetical protein FisN_16Hh008 [Fistulifera solaris]) HSP 1 Score: 310.457 bits (794), Expect = 4.444e-101 Identity = 146/259 (56.37%), Postives = 194/259 (74.90%), Query Frame = 0
Query: 23 AAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEK-THQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYD 280
A PT+ W Y +P I+M +LKKKY A+WALVTGG SGIG+A+ LA QGLNV VVS+DDD LK T++EL+ FPKQEFR+VGV FAPG Y+ +I ATKDI + I+F NAG+++TGF D P+EK LAN+ECNAT+AV ++HHF++ L+Q K GCIVFTSSV+G++P+PF++MY +TKAF+SQFAACL +EVK GIDV ++HPSPVAS FY K H+++M++ K+AV P+ + + + IG C D
Sbjct: 30 AFPTLFWFVAYLIPQIYMAFRPVPNLKKKYAAEWALVTGGGSGIGKALCFALAQQGLNVVVVSLDDDFLKTTMQELKRQFPKQEFRSVGVNFAPGVKYMDAVIKATKDIHIPIVFCNAGFMVTGFLDQAPIEKLLANIECNATSAVNVSHHFVKILVQNKQKGCIVFTSSVAGFIPTPFAAMYASTKAFVSQFAACLHIEVKPLGIDVCAIHPSPVASNFYHKLDHKVDMIEAAAKSAVTPESVTNDMLRSIGPCALRD 288
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|397630644|gb|EJK69853.1| (hypothetical protein THAOC_08851 [Thalassiosira oceanica]) HSP 1 Score: 303.138 bits (775), Expect = 4.788e-98 Identity = 163/322 (50.62%), Postives = 206/322 (63.98%), Query Frame = 0
Query: 18 ILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKT-HQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYDQVSDNPSPHPPSRFDCPVRTRTSQLARSVNLFKACHTFFFPHIYPLFTLAFFWGGPWL 338
++ +A + W TY LP I+M + DLKK+Y+A+WALVTG SGIGR+I +LA QGLNV +VS+DD L TVKEL+ +PKQ+FR VG F+PG Y+ I ATKDIDV+I+FNNAG+I+TGF D L K LANVECN+TAA I HHFLQKL+ K GCIVFTSSV+G++P+PF++ Y ATK+F+SQ A L +EV++ GIDV +VHPSPVAS FYEK H++E+++ K A PD LP+ IF IG C D S V TR TFF P Y LF AF P+L
Sbjct: 32 VIYLLAFLSAFWIVTYALPQIYMAIRPVPDLKKRYDAEWALVTGSGSGIGRSICFKLASQGLNVVLVSIDDQHLAKTVKELRQRYPKQQFRTVGCTFSPGVNYIAAIEEATKDIDVKIVFNNAGFIVTGFTDQTILPKLLANVECNSTAAFVIAHHFLQKLVANKQKGCIVFTSSVAGFIPTPFAASYAATKSFVSQLACSLHIEVQALGIDVCAVHPSPVASNFYEKVDHKIEIMEAACKNAAEPDALPNDIFRSIGCCALRDLGS------------MAVGTRMG-------------TFFIP--YNLFACAFTAAAPFL 326
BLAST of EWM24490.1 vs. NCBI_GenBank
Match: gi|1072230583|gb|OEU15316.1| (NAD(P)-binding protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 300.827 bits (769), Expect = 6.536e-98 Identity = 145/235 (61.70%), Postives = 179/235 (76.17%), Query Frame = 0
Query: 47 DLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEK-THQMEMLDMVKKTAVAPDELPSQIFSGIGRCHWYD 280
DLKK+YNA W+LVTGG SGIG+A+ +LA QGLNV VVS+DDD LK T+K+L+ FP EFR+VG F+PG YL +I ATKDI++ IIFNNAG+++TGFFD PL K LANVECNATAAV ITHHF+ KL+ K GC+VFTSSV+G++P+PFS MYGATKAF SQ A L +E+KS GIDV +VHPSPV+S FY H++E+L+ K AV P++LP IF IG C D
Sbjct: 8 DLKKRYNATWSLVTGGGSGIGKALSFKLARQGLNVVVVSLDDDFLKATMKQLKETFPDLEFRSVGCAFSPGVDYLKQINEATKDIEIPIIFNNAGFLVTGFFDQAPLGKLLANVECNATAAVNITHHFVSKLVSSKKKGCVVFTSSVAGFIPTPFSGMYGATKAFCSQLACSLHIELKSLGIDVCAVHPSPVSSNFYNDLDHKIEILESACKAAVPPEDLPDDIFRSIGACALRD 242 The following BLAST results are available for this feature:
BLAST of EWM24490.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|