EWM30057.1, cds608 (CDS) Nannochloropsis gaditana

Overview
NameEWM30057.1
Unique Namecds608
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1515509..1515630 +
Alignment locationCM002455.1:1515955..1516020 +
Alignment locationCM002455.1:1516149..1516520 +
Alignment locationCM002455.1:1516638..1516740 +
Alignment locationCM002455.1:1516869..1516945 +
Alignment locationCM002455.1:1517068..1517131 +
Alignment locationCM002455.1:1517330..1517428 +
Alignment locationCM002455.1:1517591..1517696 +
Alignment locationCM002455.1:1517823..1517884 +
Alignment locationCM002455.1:1517998..1518042 +
Alignment locationCM002455.1:1518206..1518280 +
Alignment locationCM002455.1:1518459..1518522 +
Alignment locationCM002455.1:1518683..1518732 +
Alignment locationCM002455.1:1518917..1519132 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30057.1
Productsplicing factor 1
Orig transcript idgnl|cribi|Naga_100170g9.5466.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1515509..1515630 +
CM002455.1supercontigCM002455.1:1515955..1516020 +
CM002455.1supercontigCM002455.1:1516149..1516520 +
CM002455.1supercontigCM002455.1:1516638..1516740 +
CM002455.1supercontigCM002455.1:1516869..1516945 +
CM002455.1supercontigCM002455.1:1517068..1517131 +
CM002455.1supercontigCM002455.1:1517330..1517428 +
CM002455.1supercontigCM002455.1:1517591..1517696 +
CM002455.1supercontigCM002455.1:1517823..1517884 +
CM002455.1supercontigCM002455.1:1517998..1518042 +
CM002455.1supercontigCM002455.1:1518206..1518280 +
CM002455.1supercontigCM002455.1:1518459..1518522 +
CM002455.1supercontigCM002455.1:1518683..1518732 +
CM002455.1supercontigCM002455.1:1518917..1519132 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0045131pre-mRNA branch point binding
GO:0003723RNA binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR031150BBP/SF1
IPR004088KH_dom_type_1
IPR004087KH_dom
IPR001878Znf_CCHC
Homology
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|585112689|gb|EWM30057.1| (splicing factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 1046.96 bits (2706), Expect = 0.000e+0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0
Query:    1 MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGGRFEMGCAGGKRPEGGGWRRAGRLTSFPLHSSLPPRSVSPKRE 506
            MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGGRFEMGCAGGKRPEGGGWRRAGRLTSFPLHSSLPPRSVSPKRE
Sbjct:    1 MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGGRFEMGCAGGKRPEGGGWRRAGRLTSFPLHSSLPPRSVSPKRE 506          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|553188729|ref|XP_005854854.1| (hypothetical protein NGA_0419300, partial [Nannochloropsis gaditana CCMP526] >gi|422294208|gb|EKU21508.1| hypothetical protein NGA_0419300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 457/465 (98.28%), Postives = 461/465 (99.14%), Query Frame = 0
Query:    1 MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGGR 465
            MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEAL+AILEANMEKPKEGEKGVDE GEAQ+GKQEKEA+EGRTGP ETTTSN EKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAG +
Sbjct:    1 MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALLAILEANMEKPKEGEKGVDEGGEAQNGKQEKEADEGRTGPGETTTSNIEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGAQ 465          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|675166031|ref|XP_008891900.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|566027004|gb|ETI49915.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|568108042|gb|ETN22666.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 415.231 bits (1066), Expect = 1.034e-136
Identity = 218/453 (48.12%), Postives = 299/453 (66.00%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   +++  +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+NI+Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK+ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKQKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENINQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|567964303|gb|ETK89793.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568052663|gb|ETM49535.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570330687|gb|ETO78635.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570989378|gb|ETP47620.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 414.461 bits (1064), Expect = 2.280e-136
Identity = 217/453 (47.90%), Postives = 299/453 (66.00%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   +++  +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+N++Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK+ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKQKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENLNQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|568022307|gb|ETL96384.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 414.461 bits (1064), Expect = 2.305e-136
Identity = 218/453 (48.12%), Postives = 298/453 (65.78%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   ++   +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+NI+Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK+ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKHKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENINQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|570954426|gb|ETP19683.1| (hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 413.69 bits (1062), Expect = 3.713e-136
Identity = 218/453 (48.12%), Postives = 298/453 (65.78%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   +++  +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+NI+Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKQKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENINQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKCMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|675166027|ref|XP_008891898.1| (hypothetical protein PPTG_02535 [Phytophthora parasitica INRA-310] >gi|566027003|gb|ETI49914.1| hypothetical protein F443_06421 [Phytophthora parasitica P1569] >gi|568108041|gb|ETN22665.1| hypothetical protein PPTG_02535 [Phytophthora parasitica INRA-310] >gi|970663502|gb|KUG00663.1| Branchpoint-bridging protein [Phytophthora nicotianae])

HSP 1 Score: 414.461 bits (1064), Expect = 7.427e-136
Identity = 218/453 (48.12%), Postives = 299/453 (66.00%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   +++  +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+NI+Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK+ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKQKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENINQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|567992991|gb|ETL43178.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 412.92 bits (1060), Expect = 8.366e-136
Identity = 217/453 (47.90%), Postives = 298/453 (65.78%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   +++  +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+N++Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKQKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENLNQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKCMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|568022306|gb|ETL96383.1| (hypothetical protein L917_06113 [Phytophthora parasitica])

HSP 1 Score: 413.69 bits (1062), Expect = 1.708e-135
Identity = 218/453 (48.12%), Postives = 298/453 (65.78%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   ++   +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+NI+Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK+ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKHKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENINQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
BLAST of EWM30057.1 vs. NCBI_GenBank
Match: gi|567964302|gb|ETK89792.1| (hypothetical protein L915_06307 [Phytophthora parasitica] >gi|568052662|gb|ETM49534.1| hypothetical protein L914_06238 [Phytophthora parasitica] >gi|570330686|gb|ETO78634.1| hypothetical protein F444_06485 [Phytophthora parasitica P1976] >gi|570989377|gb|ETP47619.1| hypothetical protein F442_06467 [Phytophthora parasitica P10297])

HSP 1 Score: 413.69 bits (1062), Expect = 1.987e-135
Identity = 217/453 (47.90%), Postives = 299/453 (66.00%), Query Frame = 0
Query:    9 DTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALMAILEANMEKPKEGEKGVDELGEAQHGKQEKEAEEGRTGPEETTTSNEEKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGEAGEGKRRSRWGDGGADGNKKKSRWSQPEATPSSSMD---PDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRMLGANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTR--HNTKVKMVNVKCAICGDTSHPTRDC 456
            D Y YEEEQE++A++++ H PMK WF   +   ++ ++G +P FWQ+L TWE  R V K Y+++                                  +HG   + AE+     +E T   +++  +A  T+P +E+ +++R+SRWG   E G    GE KR             KKSRW+ P ++ +S+M        Q+ + L+ +L+N++Q+  TV MDA   E +P++SPSPPP YDS+GKR NTRE RMKAAL+K R++ IE L+KINPLFRPPADY RQK  R++YIPI++FP+YNFIGLIIGPRG TQK+ME++T  KI+IRGKGSVKEGS+ + + A     DE DDLHV ++G+ EE ++KA++ V  LL+P+DD  N+ K +QLR+LALINGTLR+D+YC++CGEKGHRQ+ECP R  H T  K VNVKCAICGD+SHPTRDC
Sbjct:   30 DEYHYEEEQEKEAMMKNYHHPMKQWFR--QRPQLEAKYGAFPLFWQELKTWEPYREVLKAYIKF---------------------------------TEHGDDVEPAEK-----KENTRDKDKQKEDAATTKPAEEQPKKRRKSRWGDPVESGADGNGEKKR-------------KKSRWA-PTSSGASAMTGLLNQKQQQSVMLRAQLENLNQKLKTVVMDAAMIEKDPNRSPSPPPQYDSNGKRTNTREVRMKAALEKRRRETIEELVKINPLFRPPADYARQKLHRKIYIPIRDFPSYNFIGLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNA-----DENDDLHVLITGDREEDLDKAAKEVQSLLVPVDDTRNAHKQKQLRELALINGTLRDDDYCHICGEKGHRQWECPNRDAHRT-FKPVNVKCAICGDSSHPTRDC 422          
The following BLAST results are available for this feature:
BLAST of EWM30057.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112689|gb|EWM30057.1|0.000e+0100.00splicing factor 1 [Nannochloropsis gaditana][more]
gi|553188729|ref|XP_005854854.1|0.000e+098.28hypothetical protein NGA_0419300, partial [Nannoch... [more]
gi|675166031|ref|XP_008891900.1|1.034e-13648.12hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567964303|gb|ETK89793.1|2.280e-13647.90hypothetical protein, variant 1 [Phytophthora para... [more]
gi|568022307|gb|ETL96384.1|2.305e-13648.12hypothetical protein, variant 1 [Phytophthora para... [more]
gi|570954426|gb|ETP19683.1|3.713e-13648.12hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675166027|ref|XP_008891898.1|7.427e-13648.12hypothetical protein PPTG_02535 [Phytophthora para... [more]
gi|567992991|gb|ETL43178.1|8.366e-13647.90hypothetical protein, variant 1 [Phytophthora para... [more]
gi|568022306|gb|ETL96383.1|1.708e-13548.12hypothetical protein L917_06113 [Phytophthora para... [more]
gi|567964302|gb|ETK89792.1|1.987e-13547.90hypothetical protein L915_06307 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna608rna608Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications