EWM24707.1, cds5966 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|585106235|gb|EWM24707.1| (heat shock transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 1280.39 bits (3312), Expect = 0.000e+0 Identity = 625/625 (100.00%), Postives = 625/625 (100.00%), Query Frame = 0 Query: 1 MTNKAMAFLGDQHHREDERRQSIECSGLQHAIRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASGSRRGSRSVSPLCSFESGTTTPSSSDSSPSISPSRGALKRTRRQEASLSRASSESSSLTSSESSPVPYDDAKHLVAGVTGAGMTCLETLSQAASSVGQNAPKAARLEREAAASYGSHGEEEQEQEQEEGMQVSYWQPPDEGPEEEVEVQKEEEDEACWVMKTMMMRGREGGAESGFEEGMQALPDEEEIVVVTKASFAPTLAKKEGPQGHKAHPPSLPFAHGPRETSPGPEKSSLGHLGVKPLPPPSFPPSSLPPDLPPPTSYHPSREELRTWGYIQSQWSAAGQSQQQALLASLPSHCHQAWASFFLIIPPFQTHQRLIRACHRLLCSNPALAASVTEHRHALDPLGRSADSTFLLPADAGEEEVEKLSIGTVAAGHNDRALREVLGFGLNHLVESARFLHTTEGSPAALALRECLQAWKCHMGRWL 625 MTNKAMAFLGDQHHREDERRQSIECSGLQHAIRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASGSRRGSRSVSPLCSFESGTTTPSSSDSSPSISPSRGALKRTRRQEASLSRASSESSSLTSSESSPVPYDDAKHLVAGVTGAGMTCLETLSQAASSVGQNAPKAARLEREAAASYGSHGEEEQEQEQEEGMQVSYWQPPDEGPEEEVEVQKEEEDEACWVMKTMMMRGREGGAESGFEEGMQALPDEEEIVVVTKASFAPTLAKKEGPQGHKAHPPSLPFAHGPRETSPGPEKSSLGHLGVKPLPPPSFPPSSLPPDLPPPTSYHPSREELRTWGYIQSQWSAAGQSQQQALLASLPSHCHQAWASFFLIIPPFQTHQRLIRACHRLLCSNPALAASVTEHRHALDPLGRSADSTFLLPADAGEEEVEKLSIGTVAAGHNDRALREVLGFGLNHLVESARFLHTTEGSPAALALRECLQAWKCHMGRWL Sbjct: 1 MTNKAMAFLGDQHHREDERRQSIECSGLQHAIRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASGSRRGSRSVSPLCSFESGTTTPSSSDSSPSISPSRGALKRTRRQEASLSRASSESSSLTSSESSPVPYDDAKHLVAGVTGAGMTCLETLSQAASSVGQNAPKAARLEREAAASYGSHGEEEQEQEQEEGMQVSYWQPPDEGPEEEVEVQKEEEDEACWVMKTMMMRGREGGAESGFEEGMQALPDEEEIVVVTKASFAPTLAKKEGPQGHKAHPPSLPFAHGPRETSPGPEKSSLGHLGVKPLPPPSFPPSSLPPDLPPPTSYHPSREELRTWGYIQSQWSAAGQSQQQALLASLPSHCHQAWASFFLIIPPFQTHQRLIRACHRLLCSNPALAASVTEHRHALDPLGRSADSTFLLPADAGEEEVEKLSIGTVAAGHNDRALREVLGFGLNHLVESARFLHTTEGSPAALALRECLQAWKCHMGRWL 625
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|585107842|gb|EWM25958.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 145.206 bits (365), Expect = 8.851e-33 Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 0 Query: 65 ANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPS 160 + F++KLF MV E+ I+SFTPDG SF VK+P RLE+E+LP+Y+RH F S VRQLNFY+FKK+SKER IWIYRH+ FQ+G+P LLD LKRK S Sbjct: 24 STCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTS 119
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|298708204|emb|CBJ30543.1| (Heat Shock transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 144.436 bits (363), Expect = 2.813e-32 Identity = 71/129 (55.04%), Postives = 86/129 (66.67%), Query Frame = 0 Query: 40 TALPSRSNSTASEDDEDIQS--------DLVP--SANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158 AL R + + DED S D+V S +F+RKLFQMV E + I+ F DG +F VKDP RLE ++LPKYFRHSRFQSLVRQLNFY FKKISKER +WIY+H F++ +P LL LKRK Sbjct: 330 VALEHRHDRNEPDLDEDAYSRSGDVPGMDVVSAGSVTSFVRKLFQMVQGECDSIVGFVADGTAFEVKDPRRLEQDILPKYFRHSRFQSLVRQLNFYSFKKISKERSVWIYKHAFFRRDEPELLHALKRK 458
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|219122184|ref|XP_002181431.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407417|gb|EEC47354.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 119.783 bits (299), Expect = 6.090e-25 Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 0 Query: 68 FIRKLFQMVTSENNDIISFTPDGLSFHV-KDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGR-HGAGNSHS 189 FI KLFQMV + +IS+TP+G +F + D RLE+E LP+YFRH+RFQSLVRQLNFY F+KI++ER +WIY+H LF + +P L+ ++R+ + R + SR GS+G+ G NS + Sbjct: 30 FILKLFQMVNGAPDKVISWTPNGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHSLFHRDRPEDLNMVRRRTCPGM-DGRKQRFSRFSVGSLGQADGDDNSDN 152
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|223998008|ref|XP_002288677.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975785|gb|EED94113.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 119.398 bits (298), Expect = 8.540e-25 Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0 Query: 68 FIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHG 183 F+ KLFQMV +DI+S+ P G +F + D RLE E LP YFRHSRFQSLVRQLNFY+F+K+++ER W+Y H LF + + L +L+R+ V R S R G ++ R G Sbjct: 25 FVMKLFQMVNGAEDDIVSWVPSGQAFRINDISRLEKETLPSYFRHSRFQSLVRQLNFYNFRKVNRERTFWVYYHPLFHRDQEENLHNLRRRTCPG-VDGRI--SKRNGGPNLDRDG 137
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|1072230657|gb|OEU15390.1| (hypothetical protein FRACYDRAFT_240076 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 110.923 bits (276), Expect = 5.718e-22 Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 0 Query: 62 VPSANTFIRKLFQMVTSENNDIISFTPDGLSFHV-KDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158 VPS FI KL+QMV +++I++TP G +F + D RLE+E LP+YFRH+RFQSLVRQLNFY F+KI++ER +WIY+H LF + P L ++R+ Sbjct: 32 VPSG--FILKLYQMVNGAPDEVITWTPSGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHNLFHRDHPEELYQVRRR 127
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|325182605|emb|CCA17061.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 98.9821 bits (245), Expect = 2.526e-19 Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 0 Query: 32 IRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158 IR + Q+ P+ SN A D PS +F+ KL++MV +E + IIS+ DG +F + DP R+ E LPKYFRH RF SL+RQLNFY F ++ +E + IY+H F++G+P LL +KR+ Sbjct: 6 IRSQSMQQ--FPTTSNELAR--------DGCPSG-SFVSKLYRMVDAEPSAIISWIRDGTAFCIVDPKRMTQECLPKYFRHGRFSSLIRQLNFYSFYRV-QEGQLTIYQHSYFRKGRPDLLVHIKRR 120
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|669163920|ref|XP_008617522.1| (hypothetical protein SDRG_13218 [Saprolegnia diclina VS20] >gi|530730821|gb|EQC29063.1| hypothetical protein SDRG_13218 [Saprolegnia diclina VS20]) HSP 1 Score: 95.5153 bits (236), Expect = 1.307e-18 Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 0 Query: 64 SANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVI-----------WIYRHKLFQQGKPHLLDDLKRKPSAS 162 +A F++K F MV+ +I ++ PDG +F VKDP + +LPKYF+HS F S VRQLNFY F+K KE ++ W + H+ F Q KPHL+ +KRK + S Sbjct: 6 TAAIFLKKTFDMVSQSPTEIAAWAPDGATFVVKDPKEFASLMLPKYFKHSNFSSFVRQLNFYGFRKSKKEVLLVALESSDIKNSWEFYHENFHQHKPHLMAKIKRKTNNS 115
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|635364481|emb|CCI47100.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 97.4413 bits (241), Expect = 1.479e-18 Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 0 Query: 64 SANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158 ++ +F+ KL++MV E + IIS+ DG +F + DP R+ E LPKYFRH RF SL+RQLNFY F ++ +E + IY+H F++G+P LL +KR+ Sbjct: 27 TSGSFVSKLYRMVDGEPSAIISWIRDGTAFCIVDPKRMTQECLPKYFRHGRFSSLIRQLNFYSFYRV-QEGQLTIYQHSYFRKGRPDLLVHIKRR 120
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|1173951294|gb|OQR99193.1| (hypothetical protein ACHHYP_07197 [Achlya hypogyna]) HSP 1 Score: 97.4413 bits (241), Expect = 4.333e-18 Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 0 Query: 67 TFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASG-SRRGSRSVSPLCSFESGTTTPS---SSDSSPSISP 230 +F+ KLF MV +E + ++++ +G +F + P L LPKYFRH RF SL+RQLNFY F K+++ I IY+H F+QG+P LL +KR+ + K++ +G R+ S SV ++ SG + R SPL SG PS + + SP++ P Sbjct: 44 SFVTKLFAMVETEPDSVVTWIREGTAFCIVQPKVLAETYLPKYFRHGRFSSLIRQLNFYSFYKVTEGSSI-IYQHTYFRQGRPDLLQHIKRRGAG---KAKDPWVDPLANGK--RYDDAYSTSVNVNVAPSGMTGRDDLCSSPLSKPLSGLQNPSLLLNDNMSPALKP 205 The following BLAST results are available for this feature:
BLAST of EWM24707.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|