EWM24707.1, cds5966 (CDS) Nannochloropsis gaditana

Overview
NameEWM24707.1
Unique Namecds5966
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:280751..281015 -
Alignment locationCM002467.1:278909..280521 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24707.1
Productheat shock transcription factor
Orig transcript idgnl|cribi|Naga_100076g18.8815.mrna
GeneHSF
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:280751..281015 -
CM002467.1supercontigCM002467.1:278909..280521 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009628response to abiotic stimulus
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991WHTH_DNA-bd_dom
IPR000232HSF_DNA-bd
Homology
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|585106235|gb|EWM24707.1| (heat shock transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 1280.39 bits (3312), Expect = 0.000e+0
Identity = 625/625 (100.00%), Postives = 625/625 (100.00%), Query Frame = 0
Query:    1 MTNKAMAFLGDQHHREDERRQSIECSGLQHAIRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASGSRRGSRSVSPLCSFESGTTTPSSSDSSPSISPSRGALKRTRRQEASLSRASSESSSLTSSESSPVPYDDAKHLVAGVTGAGMTCLETLSQAASSVGQNAPKAARLEREAAASYGSHGEEEQEQEQEEGMQVSYWQPPDEGPEEEVEVQKEEEDEACWVMKTMMMRGREGGAESGFEEGMQALPDEEEIVVVTKASFAPTLAKKEGPQGHKAHPPSLPFAHGPRETSPGPEKSSLGHLGVKPLPPPSFPPSSLPPDLPPPTSYHPSREELRTWGYIQSQWSAAGQSQQQALLASLPSHCHQAWASFFLIIPPFQTHQRLIRACHRLLCSNPALAASVTEHRHALDPLGRSADSTFLLPADAGEEEVEKLSIGTVAAGHNDRALREVLGFGLNHLVESARFLHTTEGSPAALALRECLQAWKCHMGRWL 625
            MTNKAMAFLGDQHHREDERRQSIECSGLQHAIRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASGSRRGSRSVSPLCSFESGTTTPSSSDSSPSISPSRGALKRTRRQEASLSRASSESSSLTSSESSPVPYDDAKHLVAGVTGAGMTCLETLSQAASSVGQNAPKAARLEREAAASYGSHGEEEQEQEQEEGMQVSYWQPPDEGPEEEVEVQKEEEDEACWVMKTMMMRGREGGAESGFEEGMQALPDEEEIVVVTKASFAPTLAKKEGPQGHKAHPPSLPFAHGPRETSPGPEKSSLGHLGVKPLPPPSFPPSSLPPDLPPPTSYHPSREELRTWGYIQSQWSAAGQSQQQALLASLPSHCHQAWASFFLIIPPFQTHQRLIRACHRLLCSNPALAASVTEHRHALDPLGRSADSTFLLPADAGEEEVEKLSIGTVAAGHNDRALREVLGFGLNHLVESARFLHTTEGSPAALALRECLQAWKCHMGRWL
Sbjct:    1 MTNKAMAFLGDQHHREDERRQSIECSGLQHAIRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASGSRRGSRSVSPLCSFESGTTTPSSSDSSPSISPSRGALKRTRRQEASLSRASSESSSLTSSESSPVPYDDAKHLVAGVTGAGMTCLETLSQAASSVGQNAPKAARLEREAAASYGSHGEEEQEQEQEEGMQVSYWQPPDEGPEEEVEVQKEEEDEACWVMKTMMMRGREGGAESGFEEGMQALPDEEEIVVVTKASFAPTLAKKEGPQGHKAHPPSLPFAHGPRETSPGPEKSSLGHLGVKPLPPPSFPPSSLPPDLPPPTSYHPSREELRTWGYIQSQWSAAGQSQQQALLASLPSHCHQAWASFFLIIPPFQTHQRLIRACHRLLCSNPALAASVTEHRHALDPLGRSADSTFLLPADAGEEEVEKLSIGTVAAGHNDRALREVLGFGLNHLVESARFLHTTEGSPAALALRECLQAWKCHMGRWL 625          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|585107842|gb|EWM25958.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 145.206 bits (365), Expect = 8.851e-33
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 0
Query:   65 ANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPS 160
            +  F++KLF MV  E+  I+SFTPDG SF VK+P RLE+E+LP+Y+RH  F S VRQLNFY+FKK+SKER IWIYRH+ FQ+G+P LLD LKRK S
Sbjct:   24 STCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTS 119          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|298708204|emb|CBJ30543.1| (Heat Shock transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 144.436 bits (363), Expect = 2.813e-32
Identity = 71/129 (55.04%), Postives = 86/129 (66.67%), Query Frame = 0
Query:   40 TALPSRSNSTASEDDEDIQS--------DLVP--SANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158
             AL  R +    + DED  S        D+V   S  +F+RKLFQMV  E + I+ F  DG +F VKDP RLE ++LPKYFRHSRFQSLVRQLNFY FKKISKER +WIY+H  F++ +P LL  LKRK
Sbjct:  330 VALEHRHDRNEPDLDEDAYSRSGDVPGMDVVSAGSVTSFVRKLFQMVQGECDSIVGFVADGTAFEVKDPRRLEQDILPKYFRHSRFQSLVRQLNFYSFKKISKERSVWIYKHAFFRRDEPELLHALKRK 458          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|219122184|ref|XP_002181431.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407417|gb|EEC47354.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 119.783 bits (299), Expect = 6.090e-25
Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 0
Query:   68 FIRKLFQMVTSENNDIISFTPDGLSFHV-KDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGR-HGAGNSHS 189
            FI KLFQMV    + +IS+TP+G +F +  D  RLE+E LP+YFRH+RFQSLVRQLNFY F+KI++ER +WIY+H LF + +P  L+ ++R+    +   R +  SR   GS+G+  G  NS +
Sbjct:   30 FILKLFQMVNGAPDKVISWTPNGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHSLFHRDRPEDLNMVRRRTCPGM-DGRKQRFSRFSVGSLGQADGDDNSDN 152          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|223998008|ref|XP_002288677.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975785|gb|EED94113.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.398 bits (298), Expect = 8.540e-25
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0
Query:   68 FIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHG 183
            F+ KLFQMV    +DI+S+ P G +F + D  RLE E LP YFRHSRFQSLVRQLNFY+F+K+++ER  W+Y H LF + +   L +L+R+     V  R   S R G  ++ R G
Sbjct:   25 FVMKLFQMVNGAEDDIVSWVPSGQAFRINDISRLEKETLPSYFRHSRFQSLVRQLNFYNFRKVNRERTFWVYYHPLFHRDQEENLHNLRRRTCPG-VDGRI--SKRNGGPNLDRDG 137          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|1072230657|gb|OEU15390.1| (hypothetical protein FRACYDRAFT_240076 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 110.923 bits (276), Expect = 5.718e-22
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 0
Query:   62 VPSANTFIRKLFQMVTSENNDIISFTPDGLSFHV-KDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158
            VPS   FI KL+QMV    +++I++TP G +F +  D  RLE+E LP+YFRH+RFQSLVRQLNFY F+KI++ER +WIY+H LF +  P  L  ++R+
Sbjct:   32 VPSG--FILKLYQMVNGAPDEVITWTPSGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHNLFHRDHPEELYQVRRR 127          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|325182605|emb|CCA17061.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 98.9821 bits (245), Expect = 2.526e-19
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 0
Query:   32 IRPATRQETALPSRSNSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158
            IR  + Q+   P+ SN  A         D  PS  +F+ KL++MV +E + IIS+  DG +F + DP R+  E LPKYFRH RF SL+RQLNFY F ++ +E  + IY+H  F++G+P LL  +KR+
Sbjct:    6 IRSQSMQQ--FPTTSNELAR--------DGCPSG-SFVSKLYRMVDAEPSAIISWIRDGTAFCIVDPKRMTQECLPKYFRHGRFSSLIRQLNFYSFYRV-QEGQLTIYQHSYFRKGRPDLLVHIKRR 120          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|669163920|ref|XP_008617522.1| (hypothetical protein SDRG_13218 [Saprolegnia diclina VS20] >gi|530730821|gb|EQC29063.1| hypothetical protein SDRG_13218 [Saprolegnia diclina VS20])

HSP 1 Score: 95.5153 bits (236), Expect = 1.307e-18
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 0
Query:   64 SANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVI-----------WIYRHKLFQQGKPHLLDDLKRKPSAS 162
            +A  F++K F MV+    +I ++ PDG +F VKDP    + +LPKYF+HS F S VRQLNFY F+K  KE ++           W + H+ F Q KPHL+  +KRK + S
Sbjct:    6 TAAIFLKKTFDMVSQSPTEIAAWAPDGATFVVKDPKEFASLMLPKYFKHSNFSSFVRQLNFYGFRKSKKEVLLVALESSDIKNSWEFYHENFHQHKPHLMAKIKRKTNNS 115          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|635364481|emb|CCI47100.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 97.4413 bits (241), Expect = 1.479e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 0
Query:   64 SANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158
            ++ +F+ KL++MV  E + IIS+  DG +F + DP R+  E LPKYFRH RF SL+RQLNFY F ++ +E  + IY+H  F++G+P LL  +KR+
Sbjct:   27 TSGSFVSKLYRMVDGEPSAIISWIRDGTAFCIVDPKRMTQECLPKYFRHGRFSSLIRQLNFYSFYRV-QEGQLTIYQHSYFRKGRPDLLVHIKRR 120          
BLAST of EWM24707.1 vs. NCBI_GenBank
Match: gi|1173951294|gb|OQR99193.1| (hypothetical protein ACHHYP_07197 [Achlya hypogyna])

HSP 1 Score: 97.4413 bits (241), Expect = 4.333e-18
Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 0
Query:   67 TFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPSASLVKSRTESSSRRGSGSMGRHGAGNSHSVGRPMSASG-SRRGSRSVSPLCSFESGTTTPS---SSDSSPSISP 230
            +F+ KLF MV +E + ++++  +G +F +  P  L    LPKYFRH RF SL+RQLNFY F K+++   I IY+H  F+QG+P LL  +KR+ +    K++        +G   R+    S SV   ++ SG + R     SPL    SG   PS   + + SP++ P
Sbjct:   44 SFVTKLFAMVETEPDSVVTWIREGTAFCIVQPKVLAETYLPKYFRHGRFSSLIRQLNFYSFYKVTEGSSI-IYQHTYFRQGRPDLLQHIKRRGAG---KAKDPWVDPLANGK--RYDDAYSTSVNVNVAPSGMTGRDDLCSSPLSKPLSGLQNPSLLLNDNMSPALKP 205          
The following BLAST results are available for this feature:
BLAST of EWM24707.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106235|gb|EWM24707.1|0.000e+0100.00heat shock transcription factor [Nannochloropsis g... [more]
gi|585107842|gb|EWM25958.1|8.851e-3364.58Winged helix-turn-helix transcription repressor [N... [more]
gi|298708204|emb|CBJ30543.1|2.813e-3255.04Heat Shock transcription factor [Ectocarpus silicu... [more]
gi|219122184|ref|XP_002181431.1|6.090e-2548.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223998008|ref|XP_002288677.1|8.540e-2548.28predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072230657|gb|OEU15390.1|5.718e-2253.06hypothetical protein FRACYDRAFT_240076 [Fragilario... [more]
gi|325182605|emb|CCA17061.1|2.526e-1943.31conserved hypothetical protein [Albugo laibachii N... [more]
gi|669163920|ref|XP_008617522.1|1.307e-1842.73hypothetical protein SDRG_13218 [Saprolegnia dicli... [more]
gi|635364481|emb|CCI47100.1|1.479e-1847.37unnamed protein product [Albugo candida][more]
gi|1173951294|gb|OQR99193.1|4.333e-1836.31hypothetical protein ACHHYP_07197 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5981rna5981Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications