EWM24794.1, cds5879 (CDS) Nannochloropsis gaditana

Overview
NameEWM24794.1
Unique Namecds5879
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:15575..16075 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24794.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_103136g1.10513.mrna
GbkeyCDS
End range.
End range16075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:15575..16075 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24794.1 vs. NCBI_GenBank
Match: gi|585106384|gb|EWM24794.1| (hypothetical protein Naga_103136g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 314.309 bits (804), Expect = 4.350e-108
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 
Query:    1 PAPPVPHASSEDSEEMAEASVTRQPPPGAWRAPEREAGSNVTGDGPPASAAMEGEGAWEGLGEGQGEDEGSQSSSFASALSSTSPSIPSSSAPSALTEARSPSLSISSCSSASCSGSSSSCSPSFSETEGEDGREGGHSNPQSPAKQRREPYGPTLRRTGLGGKLL 166
            PAPPVPHASSEDSEEMAEASVTRQPPPGAWRAPEREAGSNVTGDGPPASAAMEGEGAWEGLGEGQGEDEGSQSSSFASALSSTSPSIPSSSAPSALTEARSPSLSISSCSSASCSGSSSSCSPSFSETEGEDGREGGHSNPQSPAKQRREPYGPTLRRTGLGGKLL
Sbjct:    1 PAPPVPHASSEDSEEMAEASVTRQPPPGAWRAPEREAGSNVTGDGPPASAAMEGEGAWEGLGEGQGEDEGSQSSSFASALSSTSPSIPSSSAPSALTEARSPSLSISSCSSASCSGSSSSCSPSFSETEGEDGREGGHSNPQSPAKQRREPYGPTLRRTGLGGKLL 166
The following BLAST results are available for this feature:
BLAST of EWM24794.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106384|gb|EWM24794.1|4.350e-108100.00hypothetical protein Naga_103136g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5894rna5894Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications