EWM24996.1, cds5677 (CDS) Nannochloropsis gaditana

Overview
NameEWM24996.1
Unique Namecds5677
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:600243..600612 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24996.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100068g30.2420.mrna
GbkeyCDS
End range.
End range600612
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:600243..600612 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24996.1 vs. NCBI_GenBank
Match: gi|585106631|gb|EWM24996.1| (hypothetical protein Naga_100068g30, partial [Nannochloropsis gaditana])

HSP 1 Score: 248.825 bits (634), Expect = 1.368e-83
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MGRRWASKQKPSSQLLSLLGLIFCAQLYIIFHSSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEKDVTGSKKRIL 123
            MGRRWASKQKPSSQLLSLLGLIFCAQLYIIFHSSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEKDVTGSKKRIL
Sbjct:    1 MGRRWASKQKPSSQLLSLLGLIFCAQLYIIFHSSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEKDVTGSKKRIL 123          
BLAST of EWM24996.1 vs. NCBI_GenBank
Match: gi|585106628|gb|EWM24994.1| (hypothetical protein Naga_101727g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 181.8 bits (460), Expect = 9.001e-57
Identity = 112/123 (91.06%), Postives = 112/123 (91.06%), Query Frame = 0
Query:    2 GRRWASKQKPSSQLLSLLGLIFCAQLYIIFHSSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEK----DVTGSKK 120
             RRW SKQKPSSQLL LLGLIFCAQLYIIFHSSSSS CAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVD NSVSGWEK    DV G KK
Sbjct:   24 ARRWTSKQKPSSQLLLLLGLIFCAQLYIIFHSSSSS-CAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKKK 145          
BLAST of EWM24996.1 vs. NCBI_GenBank
Match: gi|585106121|gb|EWM24604.1| (hypothetical protein Naga_100171g10 [Nannochloropsis gaditana])

HSP 1 Score: 80.1073 bits (196), Expect = 4.958e-15
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 0
Query:   60 SPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEKDVTGSK 119
            + T+P E P LP    PL VACL++ RTVSTTA+NL R+LMERVD NS+SGWE DV GS+
Sbjct:   86 NETLPYEPPRLP---SPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWEHDVVGSR 142          
The following BLAST results are available for this feature:
BLAST of EWM24996.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106631|gb|EWM24996.1|1.368e-83100.00hypothetical protein Naga_100068g30, partial [Nann... [more]
gi|585106628|gb|EWM24994.1|9.001e-5791.06hypothetical protein Naga_101727g1, partial [Nanno... [more]
gi|585106121|gb|EWM24604.1|4.958e-1563.33hypothetical protein Naga_100171g10 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5692rna5692Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications