EWM26618.1, cds4030 (CDS) Nannochloropsis gaditana

Overview
NameEWM26618.1
Unique Namecds4030
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:684625..684959 +
Alignment locationCM002462.1:685120..685759 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26618.1
Productarginine-trna-protein transferase 1-like protein
Orig transcript idgnl|cribi|Naga_100001g75.8129.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:684625..684959 +
CM002462.1supercontigCM002462.1:685120..685759 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|585108706|gb|EWM26618.1| (arginine-trna-protein transferase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query:    1 MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKRENDVASINSDGASTAPAQVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGGMA 324
            MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKRENDVASINSDGASTAPAQVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGGMA
Sbjct:    1 MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKRENDVASINSDGASTAPAQVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGGMA 324          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|553186572|ref|XP_005854443.1| (hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526] >gi|422294609|gb|EKU21909.1| hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 322/324 (99.38%), Postives = 322/324 (99.38%), Query Frame = 0
Query:    1 MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKRENDVASINSDGASTAPAQVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGGMA 324
            MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKRE DVASINSDGASTAPAQVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKT AFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGGMA
Sbjct:    1 MPTSSPCVLASLFIVLLLLYPPSGCVCFRLGKREKDVASINSDGASTAPAQVQQWKVPRLSKVVAEAMGHGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTCAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGGMA 324          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|551551947|ref|XP_005763395.1| (hypothetical protein EMIHUDRAFT_105039 [Emiliania huxleyi CCMP1516] >gi|485612723|gb|EOD10966.1| hypothetical protein EMIHUDRAFT_105039 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 137.117 bits (344), Expect = 1.781e-34
Identity = 79/251 (31.47%), Postives = 135/251 (53.78%), Query Frame = 0
Query:   70 HGGDSATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDV-ESVAATEVDVAEFFRRESRRSLEMTKERI 319
              G +A   +   A +LM++RG  N  KAA+  +  L + P +A++K + ADA   + R  TNAN+++I+G  DS   +K+W+T   EA  +  +     P + +   +  +A+ + +S+KGI+K A+TG G  ++ L  ++ + HP +D  V   F G F   APWP+    KA +  +      P + RN +++GV  + AG +  A   F+RA+   V    ++TE D+A+F    +RR L+  +E I
Sbjct:   57 QAGGAAADPQRKQAGELMKKRGVANAEKAASLLRESLRRDPENAAIKLELADALNMVTRIKTNANSLVIEGTQDSPAFKKIWRTLGGEALPLALDARKAFPGSVKALSVYADAFMFSSSAKGIVKQALTGVGKKYVALAKELYA-HPEWDGAVGCAFLGGFYAVAPWPIGSKGKAAKYLDEGARRAP-TRRNLYYVGVVSYQAGDYRKAADHFQRAIATPVSREPSSTEADIADFLLERARRGLKAAQEAI 305          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|1129193422|gb|OLP98033.1| (hypothetical protein AK812_SmicGene19561 [Symbiodinium microadriaticum])

HSP 1 Score: 132.494 bits (332), Expect = 5.831e-33
Identity = 80/269 (29.74%), Postives = 138/269 (51.30%), Query Frame = 0
Query:   63 VVAEAMGHGGDSATSV-------ECHTADKLMQE--RGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERIDGG 322
            V+A  +   GD  T V       E   A K M +  R       +A  ++  +E +P  A L+ + ADA   ++R  TN N +LI G  DS+ N K+WK    EA+D      A  P+N +   +  +A+ Y +S+ GIL+ A+TG G  F+R   ++ +  P  + G+ FIF G F +AAPWPLRD+ +A+     A   + +  RN +++G++++H  ++E A   F ++   D +    +E D A    +E++  +++  + +  G
Sbjct:   14 VLAWCISQQGDPTTMVASPPLQKELEKARKTMAKAPRSVSECEASAGTFRAAVESRPEDALLRLQLADALNCVMRIKTNGNMLLISGTQDSQSNIKVWKEVGPEAWDNANRALAALPKNPQAASVYADAFQYMSSAHGILRQALTGGGREFLRNAQRMQAVGPDEEGGLGFIFEGCFYIAAPWPLRDLKRALGLMRRAL-AQKKCKRNYYYVGLANYHLQNYEEAIDYFAKSA--DAKPEFLSEFDFAAGLTQEAQHGIKLATDALRAG 279          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|922853448|gb|KOO22063.1| (mog1p -like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 129.028 bits (323), Expect = 8.074e-31
Identity = 71/234 (30.34%), Postives = 128/234 (54.70%), Query Frame = 0
Query:   86 LMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERI 319
            LM++RG D   KA    +  L+K+P +     + ADA  +++R  TNANA++IDG  D+  N+++WK+   EA  + K+ +   P + +   +  +++ +  S+KGI+K A++G    + R+ +++  ++P +D  V  +F G     APWP+ +   A +    A  + P + RN +++GV+ F  G F+ A + FE+A+     S  ATE+D   F   ES+  L   K+ +
Sbjct:  147 LMKQRGLDKCEKAVGLLRSALKKEPGNIETAMELADALNAVMRIKTNANALVIDGSLDTPANKRVWKSLGDEALPLAKKAYEARPGDVKALAVYADSFMFSCSAKGIVKQALSGTAKEYKRVANEL-RKYPKWDGAVGLVFLGGLYNVAPWPVGNKQLAKKLLGEAASIAP-TRRNLYYVGVNAFQLGEFQKAAKYFEKALKAPCGS--ATEMDFGGFLLAESKTGLARAKQAL 376          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|1084769294|gb|OGQ09481.1| (hypothetical protein A2138_15530 [Deltaproteobacteria bacterium RBG_16_71_12])

HSP 1 Score: 122.094 bits (305), Expect = 5.876e-29
Identity = 62/220 (28.18%), Postives = 112/220 (50.91%), Query Frame = 0
Query:   94 NYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLE 313
            ++ +A A +   L K+P    L  K   +  +++R+ T  N  L++G SD+  N+++W      ++D+   +    P++    +   EAY Y +SS GI++A ++G    + +  D I++     D  V  I+ GAF + APWP+ DV KA E F  A  V PRS+RN +++G+  +  G F  A + F     +D      +E+D     + +++  L+
Sbjct:   57 SFERAVAIFDAELAKKPGDLDLSLKLCTSLNAVMRAKTQGNLALVNGTSDTPANKRIWGELGKRSHDLCTAVQKARPKDLETALQTAEAYMYLSSSMGIIQAVMSGAANQYKKNADVILALDKRADDDVGDIYHGAFYIVAPWPMNDVKKAREHFAKAAAVAPRSVRNRYYVGLGAYKDGDFATAEREF--VFARDNPCTTKSEIDFCSAIKAQAKLGLD 274          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|922887634|gb|KOO53173.1| (3-hydroxyisobutyryl- hydrolase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 117.087 bits (292), Expect = 1.044e-25
Identity = 74/229 (32.31%), Postives = 117/229 (51.09%), Query Frame = 0
Query:   86 LMQERGPDNYRKAAAEYKLLLEK-QPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLE 313
            L Q R   +  +AA+  + LL K +     L    A A  +++R  TN+N + I  + D+ EN+ +W++    A ++        PQ+    V   +AY +  S KG+L AAVTG GL F     +++ R P  D GV   + GAF L APWPL +  +A E   +A  + P S RN++++GV H+  G    A + F +A+     S  A+E D   F  RE++ +L+
Sbjct:  284 LRQGRSRADCERAASLLEGLLAKGEDGDGRLSLACAKALNAIMRIRTNSNTLHITRLLDTPENKAVWRSLGPRALELATRAKKARPQDPEALVAYADAYFFANSVKGVLAAAVTGSGLEFKGNSKELIRRCPRADGGVGHCYLGAFFLMAPWPLCNPKRAEEHLSTAHRIVP-SRRNSYYMGVLHYRLGRPAEAERYFRQALSAKCAS--ASEADFGGFMLREAKAALD 509          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|922864774|gb|KOO31959.1| (hypothetical protein Ctob_015312 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 88.9669 bits (219), Expect = 1.464e-17
Identity = 46/150 (30.67%), Postives = 82/150 (54.67%), Query Frame = 0
Query:  127 LRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARI---HVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAG 273
            +R+    N +L++G  D+ +N+K W  +   A  + +   A++P         V+  +A+ Y+T+S GI++ A+TG G+ F +L D+  +  P++D GV + +   F   APWPL D  +A+   E A     RS RNN+++ +  + AG
Sbjct:    1 MRTHGKGNILLVEGTLDTADNKKFWGQHGPRALSLARAALAEDPDLISYDLARVIELDAFMYKTASTGIVRNALTGAGVEFKKLADEFTATFPSFDGGVGYTYLAGFYHVAPWPLGDKKRALVEAERAVATSGRSKRNNYYVCLFKYVAG 150          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|585108816|gb|EWM26728.1| (arginine-trna-protein transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 84.3445 bits (207), Expect = 1.313e-14
Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  107 EKQPNSASLK-------FKFADASVSLLRSLTNANAV-LIDGVSD--SKENRKLWKTYAFEAYDILKEL--HAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAV 286
            EK   S++LK        + A+A +  +R  TN   +   DG S   S E R +   Y  E   I+  L  H    ++AR+ +  TEA +Y  S+  ++KAA         + +D ++++ P    G PFI +G   L AP P+R V KA E F++A +++  S RNN+F GV+ +    +  A + F  A+
Sbjct:  145 EKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLA--RIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEAL 334          
BLAST of EWM26618.1 vs. NCBI_GenBank
Match: gi|337260239|gb|AEI66399.1| (hypothetical protein LILAB_22520 [Myxococcus fulvus HW-1])

HSP 1 Score: 64.6994 bits (156), Expect = 1.819e-8
Identity = 41/153 (26.80%), Postives = 67/153 (43.79%), Query Frame = 0
Query:  134 NAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGL--TFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFER 284
             A ++   +D   N KL K    + +D   +     P     H          + + G++KA   G+GL   F   +D+ +   P YD G P + +G +    PWP RD+ K+   +E A    P+ LR  +FL  +    G  E AR+A ++
Sbjct:   57 KARILQWQADGAANEKLKKVLGRQTWDWGDKAVKLNPARVEGHYYAAAGIGAYSQAVGVMKA--LGEGLEGKFNERLDKAIQIDPDYDRGAPLLAKGRYHYELPWPKRDLAKSASLYEKASAKHPQMLRAYYFLAETLLKDGKPEKAREAIQK 207          
The following BLAST results are available for this feature:
BLAST of EWM26618.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108706|gb|EWM26618.1|0.000e+0100.00arginine-trna-protein transferase 1-like protein [... [more]
gi|553186572|ref|XP_005854443.1|0.000e+099.38hypothetical protein NGA_0014302 [Nannochloropsis ... [more]
gi|551551947|ref|XP_005763395.1|1.781e-3431.47hypothetical protein EMIHUDRAFT_105039 [Emiliania ... [more]
gi|1129193422|gb|OLP98033.1|5.831e-3329.74hypothetical protein AK812_SmicGene19561 [Symbiodi... [more]
gi|922853448|gb|KOO22063.1|8.074e-3130.34mog1p -like protein [Chrysochromulina sp. CCMP291][more]
gi|1084769294|gb|OGQ09481.1|5.876e-2928.18hypothetical protein A2138_15530 [Deltaproteobacte... [more]
gi|922887634|gb|KOO53173.1|1.044e-2532.313-hydroxyisobutyryl- hydrolase [Chrysochromulina s... [more]
gi|922864774|gb|KOO31959.1|1.464e-1730.67hypothetical protein Ctob_015312 [Chrysochromulina... [more]
gi|585108816|gb|EWM26728.1|1.313e-1430.73arginine-trna-protein transferase 1 [Nannochlorops... [more]
gi|337260239|gb|AEI66399.1|1.819e-826.80hypothetical protein LILAB_22520 [Myxococcus fulvu... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4040rna4040Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications