scaffold42, scaffold42 (supercontig) Nannochloropsis salina

Overview
Namescaffold42
Unique Namescaffold42
Typesupercontig
OrganismNannochloropsis salina (N. salina CCMP1776)
Sequence length155137
Alignment locationNSK007419:340..1582 -
Alignment locationNSK007419t:340..1582 -
Alignment locationNSK007420:2351..3268 -
Alignment locationNSK007420t:2351..3268 -
Alignment locationNSK007421:3643..6993 +
Alignment locationNSK007421t:3643..6993 +
Alignment locationNSK007422:4983..5694 +
Alignment locationNSK007422t:4983..5694 +
Alignment locationNSK007423:6511..7314 +
Alignment locationNSK007423t:6511..7314 +
Alignment locationNSK007424:8122..9088 -
Alignment locationNSK007424t:8122..9088 -
Alignment locationNSK007425:11531..13222 +
Alignment locationNSK007425t:11531..13222 +
Alignment locationNSK007426:14424..15622 -
Alignment locationNSK007426t:14424..15622 -
Alignment locationNSK007427:15995..18479 +
Alignment locationNSK007427t:15995..18479 +
Alignment locationNSK007428:19551..20597 +
Alignment locationNSK007428t:19551..20597 +
Alignment locationNSK007429:24054..25031 +
Alignment locationNSK007429t:24054..25031 +
Alignment locationNSK007430:25252..25621 -
Alignment locationNSK007430t:25252..25621 -
Alignment locationNSK007431:25712..26840 +
Alignment locationNSK007431t:25712..26840 +
Alignment locationNSK007432:27521..28628 +
Alignment locationNSK007432t:27521..28628 +
Alignment locationNSK007433:29330..30372 +
Alignment locationNSK007433t:29330..30372 +
Alignment locationNSK007434:31074..32203 +
Alignment locationNSK007434t:31074..32203 +
Alignment locationNSK007435:32824..33936 +
Alignment locationNSK007435t:32824..33936 +
Alignment locationNSK007436:34638..35680 +
Alignment locationNSK007436t:34638..35680 +
Alignment locationNSK007437:36382..37424 +
Alignment locationNSK007437t:36382..37424 +
Alignment locationNSK007438:38126..39234 +
Alignment locationNSK007438t:38126..39234 +
Alignment locationNSK007439:39936..40978 +
Alignment locationNSK007439t:39936..40978 +
Alignment locationNSK007440:41680..42842 +
Alignment locationNSK007440t:41680..42842 +
Alignment locationNSK007441:43544..44706 +
Alignment locationNSK007441t:43544..44706 +
Alignment locationNSK007442:44907..45315 -
Alignment locationNSK007442t:44907..45315 -
Alignment locationNSK007443:45406..46534 +
Alignment locationNSK007443t:45406..46534 +
Alignment locationNSK007444:47234..48366 +
Alignment locationNSK007444t:47234..48366 +
Alignment locationNSK007445:49045..50102 +
Alignment locationNSK007445t:49045..50102 +
Alignment locationNSK007446:50804..51846 +
Alignment locationNSK007446t:50804..51846 +
Alignment locationNSK007447:52527..53627 +
Alignment locationNSK007447t:52527..53627 +
Alignment locationNSK007448:54308..55353 +
Alignment locationNSK007448t:54308..55353 +
Alignment locationNSK007449:56037..57133 +
Alignment locationNSK007449t:56037..57133 +
Alignment locationNSK007450:57814..58911 +
Alignment locationNSK007450t:57814..58911 +
Alignment locationNSK007451:59024..59488 -
Alignment locationNSK007451t:59024..59488 -
Alignment locationNSK007452:59579..60728 +
Alignment locationNSK007452t:59579..60728 +
Alignment locationNSK007453:61409..62509 +
Alignment locationNSK007453t:61409..62509 +
Alignment locationNSK007454:63190..64231 +
Alignment locationNSK007454t:63190..64231 +
Alignment locationNSK007455:64344..64821 -
Alignment locationNSK007455t:64344..64821 -
Alignment locationNSK007456:65791..66733 -
Alignment locationNSK007456t:65791..66733 -
Alignment locationNSK007457:69640..70904 +
Alignment locationNSK007457t:69640..70904 +
Alignment locationNSK007458:73495..74677 -
Alignment locationNSK007458t:73495..74677 -
Alignment locationNSK007459:75224..78574 +
Alignment locationNSK007459t:75224..78574 +
Alignment locationNSK007460:78996..86817 -
Alignment locationNSK007460t:78996..86817 -
Alignment locationNSK007461:83563..84206 +
Alignment locationNSK007461t:83563..84206 +
Alignment locationNSK007462:84230..84869 -
Alignment locationNSK007462t:84230..84869 -
Alignment locationNSK007463:87690..88018 +
Alignment locationNSK007463t:87690..88018 +
Alignment locationNSK007464:89277..89897 -
Alignment locationNSK007464t:89277..89897 -
Alignment locationNSK007465:90612..92894 +
Alignment locationNSK007465t:90612..92894 +
Alignment locationNSK007466:94110..95219 +
Alignment locationNSK007466t:94110..95219 +
Alignment locationNSK007467:95761..96281 -
Alignment locationNSK007467t:95761..96281 -
Alignment locationNSK007468:96341..97352 -
Alignment locationNSK007468t:96341..97352 -
Alignment locationNSK007469:99061..102760 +
Alignment locationNSK007469t:99061..102760 +
Alignment locationNSK007470:101533..101879 +
Alignment locationNSK007470t:101533..101879 +
Alignment locationNSK007471:102894..103496 -
Alignment locationNSK007471t:102894..103496 -
Alignment locationNSK007472:104193..104987 +
Alignment locationNSK007472t:104193..104987 +
Alignment locationNSK007473:105424..105623 -
Alignment locationNSK007473t:105424..105623 -
Alignment locationNSK007474:106848..109357 -
Alignment locationNSK007474t:106848..109357 -
Alignment locationNSK007475:111716..113425 +
Alignment locationNSK007475t:111716..113425 +
Alignment locationNSK007476:114433..119784 +
Alignment locationNSK007476t:114433..119784 +
Alignment locationNSK007477:122056..125838 -
Alignment locationNSK007477t:122056..125838 -
Alignment locationNSK007478:126525..126756 -
Alignment locationNSK007478t:126525..126756 -
Alignment locationNSK007479:126939..128233 +
Alignment locationNSK007479t:126939..128233 +
Alignment locationNSK007480:129336..131476 -
Alignment locationNSK007480t:129336..131476 -
Alignment locationNSK007481:135874..137013 +
Alignment locationNSK007481t:135874..137013 +
Alignment locationNSK007482:138928..139803 +
Alignment locationNSK007482t:138928..139803 +
Alignment locationNSK007483:139887..140405 +
Alignment locationNSK007483t:139887..140405 +
Alignment locationNSK007484:142659..143798 +
Alignment locationNSK007484t:142659..143798 +
Alignment locationNSK007485:146052..147191 +
Alignment locationNSK007485t:146052..147191 +
Alignment locationNSK007486:149529..150656 +
Alignment locationNSK007486t:149529..150656 +
Alignment locationNSK007487:151821..153649 -
Alignment locationNSK007487t:151821..153649 -
Alignment locationNSK007488:152163..154483 -
Alignment locationNSK007488t:152163..154483 -
Alignment locationnonsR029:341..25031 -
Alignment locationnonsR110:69641..131476 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NSK007419geneNSK007419:340..1582 -
NSK007419tmRNANSK007419t:340..1582 -
NSK007420geneNSK007420:2351..3268 -
NSK007420tmRNANSK007420t:2351..3268 -
NSK007421geneNSK007421:3643..6993 +
NSK007421tmRNANSK007421t:3643..6993 +
NSK007422geneNSK007422:4983..5694 +
NSK007422tmRNANSK007422t:4983..5694 +
NSK007423geneNSK007423:6511..7314 +
NSK007423tmRNANSK007423t:6511..7314 +
NSK007424geneNSK007424:8122..9088 -
NSK007424tmRNANSK007424t:8122..9088 -
NSK007425geneNSK007425:11531..13222 +
NSK007425tmRNANSK007425t:11531..13222 +
NSK007426geneNSK007426:14424..15622 -
NSK007426tmRNANSK007426t:14424..15622 -
NSK007427geneNSK007427:15995..18479 +
NSK007427tmRNANSK007427t:15995..18479 +
NSK007428geneNSK007428:19551..20597 +
NSK007428tmRNANSK007428t:19551..20597 +
NSK007429geneNSK007429:24054..25031 +
NSK007429tmRNANSK007429t:24054..25031 +
NSK007430geneNSK007430:25252..25621 -
NSK007430tmRNANSK007430t:25252..25621 -
NSK007431geneNSK007431:25712..26840 +
NSK007431tmRNANSK007431t:25712..26840 +
NSK007432geneNSK007432:27521..28628 +
NSK007432tmRNANSK007432t:27521..28628 +
NSK007433geneNSK007433:29330..30372 +
NSK007433tmRNANSK007433t:29330..30372 +
NSK007434geneNSK007434:31074..32203 +
NSK007434tmRNANSK007434t:31074..32203 +
NSK007435geneNSK007435:32824..33936 +
NSK007435tmRNANSK007435t:32824..33936 +
NSK007436geneNSK007436:34638..35680 +
NSK007436tmRNANSK007436t:34638..35680 +
NSK007437geneNSK007437:36382..37424 +
NSK007437tmRNANSK007437t:36382..37424 +
NSK007438geneNSK007438:38126..39234 +
NSK007438tmRNANSK007438t:38126..39234 +
NSK007439geneNSK007439:39936..40978 +
NSK007439tmRNANSK007439t:39936..40978 +
NSK007440geneNSK007440:41680..42842 +
NSK007440tmRNANSK007440t:41680..42842 +
NSK007441geneNSK007441:43544..44706 +
NSK007441tmRNANSK007441t:43544..44706 +
NSK007442geneNSK007442:44907..45315 -
NSK007442tmRNANSK007442t:44907..45315 -
NSK007443geneNSK007443:45406..46534 +
NSK007443tmRNANSK007443t:45406..46534 +
NSK007444geneNSK007444:47234..48366 +
NSK007444tmRNANSK007444t:47234..48366 +
NSK007445geneNSK007445:49045..50102 +
NSK007445tmRNANSK007445t:49045..50102 +
NSK007446geneNSK007446:50804..51846 +
NSK007446tmRNANSK007446t:50804..51846 +
NSK007447geneNSK007447:52527..53627 +
NSK007447tmRNANSK007447t:52527..53627 +
NSK007448geneNSK007448:54308..55353 +
NSK007448tmRNANSK007448t:54308..55353 +
NSK007449geneNSK007449:56037..57133 +
NSK007449tmRNANSK007449t:56037..57133 +
NSK007450geneNSK007450:57814..58911 +
NSK007450tmRNANSK007450t:57814..58911 +
NSK007451geneNSK007451:59024..59488 -
NSK007451tmRNANSK007451t:59024..59488 -
NSK007452geneNSK007452:59579..60728 +
NSK007452tmRNANSK007452t:59579..60728 +
NSK007453geneNSK007453:61409..62509 +
NSK007453tmRNANSK007453t:61409..62509 +
NSK007454geneNSK007454:63190..64231 +
NSK007454tmRNANSK007454t:63190..64231 +
NSK007455geneNSK007455:64344..64821 -
NSK007455tmRNANSK007455t:64344..64821 -
NSK007456geneNSK007456:65791..66733 -
NSK007456tmRNANSK007456t:65791..66733 -
NSK007457geneNSK007457:69640..70904 +
NSK007457tmRNANSK007457t:69640..70904 +
NSK007458geneNSK007458:73495..74677 -
NSK007458tmRNANSK007458t:73495..74677 -
NSK007459geneNSK007459:75224..78574 +
NSK007459tmRNANSK007459t:75224..78574 +
NSK007460geneNSK007460:78996..86817 -
NSK007460tmRNANSK007460t:78996..86817 -
NSK007461geneNSK007461:83563..84206 +
NSK007461tmRNANSK007461t:83563..84206 +
NSK007462geneNSK007462:84230..84869 -
NSK007462tmRNANSK007462t:84230..84869 -
NSK007463geneNSK007463:87690..88018 +
NSK007463tmRNANSK007463t:87690..88018 +
NSK007464geneNSK007464:89277..89897 -
NSK007464tmRNANSK007464t:89277..89897 -
NSK007465geneNSK007465:90612..92894 +
NSK007465tmRNANSK007465t:90612..92894 +
NSK007466geneNSK007466:94110..95219 +
NSK007466tmRNANSK007466t:94110..95219 +
NSK007467geneNSK007467:95761..96281 -
NSK007467tmRNANSK007467t:95761..96281 -
NSK007468geneNSK007468:96341..97352 -
NSK007468tmRNANSK007468t:96341..97352 -
NSK007469geneNSK007469:99061..102760 +
NSK007469tmRNANSK007469t:99061..102760 +
NSK007470geneNSK007470:101533..101879 +
NSK007470tmRNANSK007470t:101533..101879 +
NSK007471geneNSK007471:102894..103496 -
NSK007471tmRNANSK007471t:102894..103496 -
NSK007472geneNSK007472:104193..104987 +
NSK007472tmRNANSK007472t:104193..104987 +
NSK007473geneNSK007473:105424..105623 -
NSK007473tmRNANSK007473t:105424..105623 -
NSK007474geneNSK007474:106848..109357 -
NSK007474tmRNANSK007474t:106848..109357 -
NSK007475geneNSK007475:111716..113425 +
NSK007475tmRNANSK007475t:111716..113425 +
NSK007476geneNSK007476:114433..119784 +
NSK007476tmRNANSK007476t:114433..119784 +
NSK007477geneNSK007477:122056..125838 -
NSK007477tmRNANSK007477t:122056..125838 -
NSK007478geneNSK007478:126525..126756 -
NSK007478tmRNANSK007478t:126525..126756 -
NSK007479geneNSK007479:126939..128233 +
NSK007479tmRNANSK007479t:126939..128233 +
NSK007480geneNSK007480:129336..131476 -
NSK007480tmRNANSK007480t:129336..131476 -
NSK007481geneNSK007481:135874..137013 +
NSK007481tmRNANSK007481t:135874..137013 +
NSK007482geneNSK007482:138928..139803 +
NSK007482tmRNANSK007482t:138928..139803 +
NSK007483geneNSK007483:139887..140405 +
NSK007483tmRNANSK007483t:139887..140405 +
NSK007484geneNSK007484:142659..143798 +
NSK007484tmRNANSK007484t:142659..143798 +
NSK007485geneNSK007485:146052..147191 +
NSK007485tmRNANSK007485t:146052..147191 +
NSK007486geneNSK007486:149529..150656 +
NSK007486tmRNANSK007486t:149529..150656 +
NSK007487geneNSK007487:151821..153649 -
NSK007487tmRNANSK007487t:151821..153649 -
NSK007488geneNSK007488:152163..154483 -
NSK007488tmRNANSK007488t:152163..154483 -
nonsR029syntenic_regionnonsR029:341..25031 -
nonsR110syntenic_regionnonsR110:69641..131476 +
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Genome assembly for N. salina CCMP1776 (version 2)2019-10-08
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications