Genome assembly for N. salina CCMP1776 (version 2)

Overview
Analysis NameGenome assembly for N. salina CCMP1776 (version 2)
MethodHGAP3, SSPACE (HGAP3, SSPACE v2.3)
SourcePacBio Sequel 100x 4G, illumina PE
Date performed2019-10-08

Genome assembly from Korean Nannochloropsis WebDB.

① pacbio long-read assembly (HGAP3) : 282 config (25.5M)

② illumina short-read assembly : 194 contig (27.6M)

③ paired-end contig libraries by contig of illumina 

(libraries : 500bp , 800bp, 2kbp , 5kbp, 8kbp, 10kbp, 15kbp, 20kbp,....)

④ scaffolding by SSPACE v2.3 : pacbio + libraries

(result : 105 scaffolds (28.2M)) 

⑤ manual gap close

⑥ removal contaminated sample

⑦ final result : 104 scaffolds (24.7M)

 

Raw sequencing reads can be obtained by requesting to Byeong-ryool Jeong (bjeong@unist.ac.kr).

 

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