jgi.p|Nanoce1779_2|616174, mRNA_12103 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|616174
Unique Name	mRNA_12103
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	737
Alignment location	scaffold_113:33800..35479 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	616260
Track	FilteredModels2
ProteinId	616174

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_113	supercontig	scaffold_113:33800..35479 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616174	gene_12103	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616174	mRNA_12103-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12103	CDS_12103	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_113:33800..35479-
coding sequence from alignment at scaffold_113:33800..35479-

mRNA sequence

>mRNA_12103 ID=mRNA_12103|Name=jgi.p|Nanoce1779_2|616174|organism=Nannochloropsis oceanica|type=mRNA|length=737bp
AGCATTCAAACAAGTGCGGTACGGGTTCGCCGCCACGAGGTGCTCCGTGC
TTAAACTCAGCAGCATCATTCTCAACGAGCTCATCGCGCATGGCTTGCCA
GCTACCAGCCTCTCGGCGTGTGGGGTGTGGAACACAGTCAAAGGGGAAGT
AACCAAGAGCAACACCCGCGCTGTGGTCGATTTGCTGGCCCTGGGTTTCA
TCGCCGTCATGCACGGAGATGGTGTCTTAGACGCAGTAAAGGGCTGCAAC
GTCCTCAGCGGAGACACCATCATCCGTCAGCTGGCCCAGGATGTACCGGA
CGTTTCCAGGGTGAAATCGAGATTCCTCCCCCCCCCCCCTTCCTCCTCCT
CCTCCTCCTCCTCCCTCCCTTCCCCATCGTCCTCCGCGCTGTGTACGGAC
AGTGGAAGCAAAGGCGATGACGTTACGGGGGGAATGCGACTCAAGCTCAG
CACTGCGATCTCCATCCAGGTGGATCATGGTGGCCGCGTGCCGGTGTTTA
TTTCGAAAGTTGGCTCTGAGGCATCAGTCAGGGCATGTCTGGAGGGAGAG
GTGGGAGACAAAGCGACGAAGCTGTGTGGGAAGTAGAGGGAGGAAGGGAA
GGGAAGGAAGGAAAGAGGGAGGGCAGCACGTGGGAGTGGCGATGTGAGAG
TCTCGCGGGATGTCACCGATACAAAACGAAGATCCCAAAGCGGAAGAGAA
GGAGGGAGGAAAGGAAAGGAAGAATGAATCAAACCAC

protein sequence of jgi.p|Nanoce1779_2|616174

>mRNA_12103-protein ID=mRNA_12103-protein|Name=jgi.p|Nanoce1779_2|616174|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MHGDGVLDAVKGCNVLSGDTIIRQLAQDVPDVSRVKSRFLPPPPSSSSSS
SSLPSPSSSALCTDSGSKGDDVTGGMRLKLSTAISIQVDHGGRVPVFISK
VGSEASVRACLEGEVGDKATKLCGK*

mRNA from alignment at scaffold_113:33800..35479-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12103 ID=mRNA_12103|Name=jgi.p|Nanoce1779_2|616174|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp|location=Sequence derived from alignment at scaffold_113:33800..35479- (Nannochloropsis oceanica)
AGCATTCAAACAAGTGCGGTACGGGTTCGCCGCCACGAGGTAGGTATGCT
TTCCCTCCCTCCCTCTCTCCCTTCCTTCCTTTCTTTCCATACCTGTCAAT
GTGGTCGTCTTGCAAATTCTGATGACGCTTGTTCATCCCCCCCCACTCCC
TCCCGCCCAGGTGCTCCGTGCTTAAACTCAGCAGCATCATTCTCAACGAG
CTCATCGCGCATGGCTTGCCAGCTACCAGCCTCTCGGCGTGTGGGGTGTG
GAACACAGTCAAAGGGGAAGTAACCAAGGTACGTCCTTGCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCCTCTTCTGTGTCTTGTAT
CCTTCCCTGTGCCAGATTCGTCGGATTGGCCTCTTCCCCTCCCTCCCTCC
CTCCCTCCTTCCCTCCTTTTTTCTTCCCCTTCCTCCTATCTTCTTCTTAA
ATTTTCTCTCTCGGCTTCGTATCTTCTCTTGTCACCGTCATATCCCCCTG
TACATTTATTCACTCTAGCAACCACCTTTCCATCCTCCTCCCCCCCTTCG
AATACTCCGCCCTCATCTTATTTATCCCTCTCTCCCTCCCTCTTTCCTCC
CTTCCGGCAGAGCAACACCCGCGCTGTGGTCGATTTGCTGGCCCTGGGTT
TCATCGCCGTCATGCACGGAGATGGTGTCTTAGACGCAGTAAAGGTGAGG
GAGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCAGGGA
GGAATGGAGGCACATCATCTTCATCTATGCAGGCCTCACATGCTCTATCC
CTCTCTCCCTCCCTCCCTCCCTCCCTCCCTAGGGCTGCAACGTCCTCAGC
GGAGACACCATCATCCGTCAGCTGGCCCAGGATGTACCGGACGTTTCCAG
GGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAAGAAACGAGG
ATGCAGACGGGCTTTTTAAAAGAGCGTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCAGGTTGTCTTCCTGACAGACGTG
GATGGTGTCTATAACATGGATCCTGCCCTCCCCGGCTCTCGCCTCCTCCC
CCACATCCATGTTAACCAAAAAGGTGAAATCGAGATTCCTCCCCCCCCCC
CCTTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTTCCCCATCGTCCTCCGC
GCTGTGTACGGACAGTGGAAGCAAAGGCGATGACGTTACGGGGGGAATGC
GACTCAAGCTCAGCACTGCGATCTCCATCCAGGTAGGACTTGCCCTCCCA
TCCCACCCTCCCTCCCCCTCATTGAAAGATCAGCCAAGCGCTGTCGGGAC
AACTTACATGTGATTCCTCGCCCTCCCCTTCTTGCCTCCCTCCTTCCCCC
CCCTTCCTTCAGGTGGATCATGGTGGCCGCGTGCCGGTGTTTATTTCGAA
AGTTGGCTCTGAGGCATCAGTCAGGGCATGTCTGGAGGGAGAGGTGGGAG
ACAAAGCGACGAAGCTGTGTGGGAAGTAGAGGGAGGAAGGGAAGGGAAGG
AAGGAAAGAGGGAGGGCAGCACGTGGGAGTGGCGATGTGAGAGTCTCGCG
GGATGTCACCGATACAAAACGAAGATCCCAAAGCGGAAGAGAAGGAGGGA
GGAAAGGAAAGGAAGAATGAATCAAACCAC

Coding sequence (CDS) from alignment at scaffold_113:33800..35479-

>mRNA_12103 ID=mRNA_12103|Name=jgi.p|Nanoce1779_2|616174|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_113:33800..35479- (Nannochloropsis oceanica)
GTGGATCATGGTGGCCGCGTGCCGGTGTTTATTTCGAAAGTTGGCTCTGA
GGCATCAGTCAGGGCATGTCTGGAGGGAGAGGTGGGAGACAAAGCGACGA
AGCTGTGTGGGAAGTAGGTGAAATCGAGATTCCTCCCCCCCCCCCCTTCC
TCCTCCTCCTCCTCCTCCTCCCTCCCTTCCCCATCGTCCTCCGCGCTGTG
TACGGACAGTGGAAGCAAAGGCGATGACGTTACGGGGGGAATGCGACTCA
AGCTCAGCACTGCGATCTCCATCCAGGGCTGCAACGTCCTCAGCGGAGAC
ACCATCATCCGTCAGCTGGCCCAGGATGTACCGGACGTTTCCAGGATGCA
CGGAGATGGTGTCTTAGACGCAGTAAAGGTGGATCATGGTGGCCGCGTGC
CGGTGTTTATTTCGAAAGTTGGCTCTGAGGCATCAGTCAGGGCATGTCTG
GAGGGAGAGGTGGGAGACAAAGCGACGAAGCTGTGTGGGAAGTAGGTGAA
ATCGAGATTCCTCCCCCCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCC
TCCCTTCCCCATCGTCCTCCGCGCTGTGTACGGACAGTGGAAGCAAAGGC
GATGACGTTACGGGGGGAATGCGACTCAAGCTCAGCACTGCGATCTCCAT
CCAGGGCTGCAACGTCCTCAGCGGAGACACCATCATCCGTCAGCTGGCCC
AGGATGTACCGGACGTTTCCAGGATGCACGGAGATGGTGTCTTAGACGCA
GTAAAGGTGGATCATGGTGGCCGCGTGCCGGTGTTTATTTCGAAAGTTGG
CTCTGAGGCATCAGTCAGGGCATGTCTGGAGGGAGAGGTGGGAGACAAAG
CGACGAAGCTGTGTGGGAAGTAGGTGAAATCGAGATTCCTCCCCCCCCCC
CCTTCCTCCTCCTCCTCCTCCTCCTCCCTCCCTTCCCCATCGTCCTCCGC
GCTGTGTACGGACAGTGGAAGCAAAGGCGATGACGTTACGGGGGGAATGC
GACTCAAGCTCAGCACTGCGATCTCCATCCAGGGCTGCAACGTCCTCAGC
GGAGACACCATCATCCGTCAGCTGGCCCAGGATGTACCGGACGTTTCCAG
GATGCACGGAGATGGTGTCTTAGACGCAGTAAAGGTGGATCATGGTGGCC
GCGTGCCGGTGTTTATTTCGAAAGTTGGCTCTGAGGCATCAGTCAGGGCA
TGTCTGGAGGGAGAGGTGGGAGACAAAGCGACGAAGCTGTGTGGGAAGTA
GGTGAAATCGAGATTCCTCCCCCCCCCCCCTTCCTCCTCCTCCTCCTCCT
CCTCCCTCCCTTCCCCATCGTCCTCCGCGCTGTGTACGGACAGTGGAAGC
AAAGGCGATGACGTTACGGGGGGAATGCGACTCAAGCTCAGCACTGCGAT
CTCCATCCAGGGCTGCAACGTCCTCAGCGGAGACACCATCATCCGTCAGC
TGGCCCAGGATGTACCGGACGTTTCCAGGATGCACGGAGATGGTGTCTTA
GACGCAGTAAAG

Synonyms

Publications