jgi.p|Nanoce1779_2|592607, mRNA_5465 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592607
Unique Name	mRNA_5465
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1364
Alignment location	scaffold_13:481778..483427 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592693
Track	FilteredModels2
ProteinId	592607

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:481778..483427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592607	gene_5465	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592607	mRNA_5465-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5465	CDS_5465	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:481778..483427+
coding sequence from alignment at scaffold_13:481778..483427+

mRNA sequence

>mRNA_5465 ID=mRNA_5465|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp
AACAGACGTACGTGTCATTCGCAGTGGTTTCGCCTCTCGTCCTCTCATAA
GCTTTCAAGGCACGCAACTTGAAACGCAGCTGCAGCCAAGGCGTGAATTG
AAGTAAAGCATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGC
GCTTCCCATCCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACA
TTGCGTTTGGGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGC
AGCTACGTGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGA
GCCGCTCCAGCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACC
TCGACAACGTTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAA
ACGAAGCGACGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGC
CTCGACTCGTTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGAC
TCTCTCAAATTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGCT
GATAATTTGCCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTT
AAACGGAAGTACAGTCATCAGGCATTTGTTGAAGCACTTGAATCGGGACC
CGGATTTATTTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATG
TACGAGAGAGAGGGAAAGCAGGGTGATTTCTTTATGCGGCAGATCGAACC
GATTGCTGCGAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGG
CATACAACTTCCTGCACTACTCTGAACGCTTCCGGAACATGCCTGTCAGT
GACGGGGAGGTGGCCTCCAAGAATGGGCCGAATGCGCCCAACAATTGGTG
GTACTCCTTCAATCTTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAA
TTTACGATTTCGGCCCCTTGGACTATATCCCACGGCAGTACCAGTGGCTA
GGTACCATATCAAGCCCCTCGGGTCGTTCCCTTCGCGCATTTCTTATGTA
TCCCCTTCCTCTCTGTCCCTCGCCTTTGTTTTCCACCTCCAGAACGTAAG
TCCTCTTCCTCCTCCCTGATTTCCCTTTACAGAGGAGGATCTGAAGCGCG
CCAACTCCAACCGCACGCTCGCTCCTTGGATTATTGTCCACGGGCATAAA
CCTCTTTACTGCTCCAGCCCGACCCCCGAGAAATGCGACAACTGGTACAG
GAGCCAGAGGGAGGGCGTCCTCCTATCTGCTGCTGCTGCTGCTGCTTCTG
CTGCTGCTAATGCTAACCTCAGTACCACTGGGAATGCGCCTTGTCTTTCA
TCGTCTTTGCGAGG

protein sequence of jgi.p|Nanoce1779_2|592607

>mRNA_5465-protein ID=mRNA_5465-protein|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MKVLFLGAAVLLFALPILIQARHHKPEQIHIAFGQTSDLVAVQWSTRSYV
QPQQQQQQQQQVEEPLQPHSFVRWGKDPAHLDNVAEGLTVDFIDGGKTKR
RQRHHIVNMTGLEASTRYHYQVGDETLSDGLSQIYSFKTAPDAATLADNL
PVRLVVYGDMGVDLNGSTVIRHLLKHLNRDPDLFDGVVHVGDFAYDMYER
EGKQGDFFMRQIEPIAARLPYMTSMGNHEKAYNFLHYSERFRNMPVSDGE
VASKNGPNAPNNWWYSFNLGPVHLVAVSTEIYDFGPLDYIPRQYQWLGTI
SSPSGRSLRAFLMYPLPLCPSPLFSTSRT*

mRNA from alignment at scaffold_13:481778..483427+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5465 ID=mRNA_5465|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at scaffold_13:481778..483427+ (Nannochloropsis oceanica)
AACAGACGTACGTGTCATTCGCAGTGGTTTCGCCTCTCGTCCTCTCATAA
GCTTTCAAGGCACGCAACTTGAAACGCAGCTGCAGCCAAGGCGTGAATTG
AAGTAAAGCATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGC
GCTTCCCATCCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACA
TTGCGTTTGGGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGC
AGCTACGTGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGA
GCCGCTCCAGCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACC
TCGACAACGTTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAA
ACGAAGCGACGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGC
CTCGACTCGTTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGAC
TCTCTCAAATTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGCT
GATAATTTGCCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTT
AAACGGAAGTACAGTCATCAGGCATTTGTTGAAGCACTTGAATCGGGACC
CGGATTTATTTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATG
TACGAGAGAGAGGGAAAGCAGGGTGATTTCTTTATGCGGCAGATCGAACC
GATTGCTGCGAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGG
TGAGGAAGGGAGGGAGGGAGGAAGGAAGGGAAGAAGGGAAGGAAGAGATG
GATGAGGGAGTGTGGCACGATTGGAAAGGACAAGAGTGACATCATCGTCC
CATTTCCTGATTAATACGCATATACACTCAGGCATACAACTTCCTGCACT
ACTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCC
AAGAATGGGCCGAATGCGCCCAACAATTGGTGAGCACGTGCCTGAGACGA
TTGATGACGGTTAACAGATAAGAGTTGTCATTTTACTCCGCTAGCCTCTC
CCCGCGACATCGTGAGAGCTGTACTGACACCCCTCCTATCTTCCCTTTCT
CCCTCCCTCCCTCCCTCCCTCACCCCAAACTAGGTGGTACTCCTTCAATC
TTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATTTCGGC
CCCTTGGACTATATCCCACGGCAGTACCAGTGGCTAGGTACCATATCAAG
CCCCTCGGGTCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCT
GTCCCTCGCCTTTGTTTTCCACCTCCAGAACGTAAGTCCTCTTCCTCCTC
CCTGATTTCCCTTTACAGAGGAGGATCTGAAGCGCGCCAACTCCAACCGC
ACGCTCGCTCCTTGGATTATTGTCCACGGGCATAAACCTCTTTACTGCTC
CAGCCCGACCCCCGAGAAATGCGACAACTGGTACAGGAGCCAGAGGGAGG
GCGTCCTCCTATCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTAATGCT
AACCTCAGTACCACTGGGAATGCGCCTTGTCTTTCATCGTCTTTGCGAGG

Coding sequence (CDS) from alignment at scaffold_13:481778..483427+

>mRNA_5465 ID=mRNA_5465|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_13:481778..483427+ (Nannochloropsis oceanica)
ATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCAT
CCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTG
GGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTG
CAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCA
GCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACG
TTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGA
CGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCG
TTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAA
TTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGCTGATAATTTG
CCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAG
TACAGTCATCAGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTAT
TTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGA
GAGGGAAAGCAGGGTGATTTCTTTATGCGGCAGATCGAACCGATTGCTGC
GAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGGCATACAACT
TCCTGCACTACTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAG
GTGGCCTCCAAGAATGGGCCGAATGCGCCCAACAATTGGTGGTACTCCTT
CAATCTTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATT
TCGGCCCCTTGGACTATATCCCACGGCAGTACCAGTGGCTAGGTACCATA
TCAAGCCCCTCGGGTCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCC
TCTCTGTCCCTCGCCTTTGTTTTCCACCTCCAGAACGTAAATGAAGGTCT
TATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCATCCTCATCCAA
GCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTGGGCAGACCTC
GGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTGCAGCCACAGC
AGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCAGCCTCATTCC
TTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACGTTGCAGAGGG
GCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGACGGCAGCGGC
ATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCGTTACCATTAT
CAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAATTTATTCCTT
TAAGACTGCTCCTGACGCGGCTACCCTTGCTGATAATTTGCCAGTACGTC
TGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAGTACAGTCATC
AGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTATTTGATGGCGT
TGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGAGAGGGAAAGC
AGGGTGATTTCTTTATGCGGCAGATCGAACCGATTGCTGCGAGGTTGCCA
TATATGACCTCGATGGGGAACCATGAGAAGGCATACAACTTCCTGCACTA
CTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCCA
AGAATGGGCCGAATGCGCCCAACAATTGGTGGTACTCCTTCAATCTTGGA
CCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATTTCGGCCCCTT
GGACTATATCCCACGGCAGTACCAGTGGCTAGGTACCATATCAAGCCCCT
CGGGTCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCTGTCCC
TCGCCTTTGTTTTCCACCTCCAGAACGTAAATGAAGGTCTTATTCCTCGG
CGCAGCCGTCTTGCTCTTCGCGCTTCCCATCCTCATCCAAGCCCGGCATC
ACAAGCCCGAGCAAATTCACATTGCGTTTGGGCAGACCTCGGACCTGGTG
GCAGTGCAATGGTCAACCCGCAGCTACGTGCAGCCACAGCAGCAGCAGCA
GCAGCAGCAGCAGGTCGAGGAGCCGCTCCAGCCTCATTCCTTTGTGCGCT
GGGGCAAAGACCCGGCTCACCTCGACAACGTTGCAGAGGGGCTCACTGTG
GATTTTATCGACGGAGGGAAAACGAAGCGACGGCAGCGGCATCACATAGT
GAACATGACGGGCCTCGAGGCCTCGACTCGTTACCATTATCAGGTCGGAG
ACGAGACACTCAGCGACGGACTCTCTCAAATTTATTCCTTTAAGACTGCT
CCTGACGCGGCTACCCTTGCTGATAATTTGCCAGTACGTCTGGTTGTGTA
TGGTGATATGGGTGTGGATTTAAACGGAAGTACAGTCATCAGGCATTTGT
TGAAGCACTTGAATCGGGACCCGGATTTATTTGATGGCGTTGTGCATGTA
GGAGATTTTGCGTACGATATGTACGAGAGAGAGGGAAAGCAGGGTGATTT
CTTTATGCGGCAGATCGAACCGATTGCTGCGAGGTTGCCATATATGACCT
CGATGGGGAACCATGAGAAGGCATACAACTTCCTGCACTACTCTGAACGC
TTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCCAAGAATGGGCC
GAATGCGCCCAACAATTGGTGGTACTCCTTCAATCTTGGACCCGTGCATC
TGGTGGCCGTCTCCACCGAAATTTACGATTTCGGCCCCTTGGACTATATC
CCACGGCAGTACCAGTGGCTAGGTACCATATCAAGCCCCTCGGGTCGTTC
CCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCTGTCCCTCGCCTTTGT
TTTCCACCTCCAGAACGTAA

Synonyms

Publications