jgi.p|Nanoce1779_2|617486, mRNA_11833 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|617486
Unique NamemRNA_11833
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length446
Alignment locationscaffold_138:26104..26671 +

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Properties
Property NameValue
TranscriptId617572
TrackFilteredModels2
ProteinId617486
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:26104..26671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617486gene_11833Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617486mRNA_11833-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11833CDS_11833Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11833 ID=mRNA_11833|Name=jgi.p|Nanoce1779_2|617486|organism=Nannochloropsis oceanica|type=mRNA|length=446bp
CCTGCTTCTTCGCCCTCCTCCTTTTTCCTCCTCCTCCTTCCCACTGTTGC
TGTTGCTGCTGTTGATGATGCTGAAAGAGGTGTTTGTCGTACTGCTGTTG
ATGTTGCTGCTGCTGTGGACCCAATGGCCGCCACTCTCCCCCTTCCCGTC
TTGCTGCTGCTCGATGGCGTGCGCTTCATGTCAGAAGGGGAGACCCCACC
ACCTGTGGTGGCGGCAGCACTTCGTCGGGTCGTCCGTAGAGCGGAGGAAG
AGAGGGAAGGCATGTCGTGGTGGTGAGGGGGGGAGGCCGAGGAGGAGGGG
ATTGTAGCAGCAGTAGTAGTAGCAGCAGCAGTAGCAGCAGCAGCAGCGCC
ACGAGCTCGGGTCGTGCGGGTGCTGCTGACCATTCCTGCTGTTGCTGTTG
CTGTTGTTTCTGTTGCAGCTGTTGCTGCTGTTGCTGCTGTTGCTGC
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protein sequence of jgi.p|Nanoce1779_2|617486

>mRNA_11833-protein ID=mRNA_11833-protein|Name=jgi.p|Nanoce1779_2|617486|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MMLKEVFVVLLLMLLLLWTQWPPLSPFPSCCCSMACASCQKGRPHHLWWR
QHFVGSSVERRKRGKACRGGEGGRPRRRGL*
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mRNA from alignment at scaffold_138:26104..26671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11833 ID=mRNA_11833|Name=jgi.p|Nanoce1779_2|617486|organism=Nannochloropsis oceanica|type=mRNA|length=568bp|location=Sequence derived from alignment at scaffold_138:26104..26671+ (Nannochloropsis oceanica)
CCTGCTTCTTCGCCCTCCTCCTTTTTCCTCCTCCTCCTTCCCACTGTTGC
TGTTGCTGCTGTTGATGATGCTGAAAGAGGTGTTTGTCGTACTGCTGTTG
ATGTTGCTGCTGCTGTGGACCCAATGGCCGCCACTCTCCCCCTTCCCGTC
TTGCTGCTGCTCGATGGCGTGCGCTTCATGTCAGAAGGGGAGACCCCACC
ACCTGGGTGGGGGAGGGAGGGAGGGAGGGAGGGAGGGGTTGATTACTTGC
ACGTCAAAAGAGAGAAGGAAACATGCATCATCAAGCAGAGAGGGAGGGAG
GGAGGGAAGGAGGGGTTGACAAACCTGTGGTGGCGGCAGCACTTCGTCGG
GTCGTCCGTAGAGCGGAGGAAGAGAGGGAAGGCATGTCGTGGTGGTGAGG
GGGGGAGGCCGAGGAGGAGGGGATTGTAGCAGCAGTAGTAGTAGCAGCAG
CAGTAGCAGCAGCAGCAGCGCCACGAGCTCGGGTCGTGCGGGTGCTGCTG
ACCATTCCTGCTGTTGCTGTTGCTGTTGTTTCTGTTGCAGCTGTTGCTGC
TGTTGCTGCTGTTGCTGC
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Coding sequence (CDS) from alignment at scaffold_138:26104..26671+

>mRNA_11833 ID=mRNA_11833|Name=jgi.p|Nanoce1779_2|617486|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_138:26104..26671+ (Nannochloropsis oceanica)
ATGATGCTGAAAGAGGTGTTTGTCGTACTGCTGTTGATGTTGCTGCTGCT
GTGGACCCAATGGCCGCCACTCTCCCCCTTCCCGTCTTGCTGCTGCTCGA
TGGCGTGCGCTTCATGTCAGAAGGGGAGACCCCACCACCTGTGGTGGCGG
CAGCACTTCGTCGGGTCGTCCGTAGAGCGGAGGAAGAGAGGGAAGGCATG
TCGTGGTGGTGAGGGGGGGAGGCCGAGGAGGAGGGGATTGTAGATGATGC
TGAAAGAGGTGTTTGTCGTACTGCTGTTGATGTTGCTGCTGCTGTGGACC
CAATGGCCGCCACTCTCCCCCTTCCCGTCTTGCTGCTGCTCGATGGCGTG
CGCTTCATGTCAGAAGGGGAGACCCCACCACCTGTGGTGGCGGCAGCACT
TCGTCGGGTCGTCCGTAGAGCGGAGGAAGAGAGGGAAGGCATGTCGTGGT
GGTGAGGGGGGGAGGCCGAGGAGGAGGGGATTGTAG
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Synonyms
Publications