scaffold_138, scaffold_138 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_138
Unique Name	scaffold_138
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	33414
Alignment location	jgi.p\|Nanoce1779_2\|74602:26643..29613 -
Alignment location	jgi.p\|Nanoce1779_2\|74602:26643..29613 -
Alignment location	CDS_11834:29009..29184 -
Alignment location	CDS_11834:28764..28834 -
Alignment location	CDS_11834:28569..28665 -
Alignment location	CDS_11834:28268..28403 -
Alignment location	CDS_11834:28028..28135 -
Alignment location	CDS_11834:27567..27841 -
Alignment location	CDS_11834:27382..27449 -
Alignment location	CDS_11834:26754..27226 -
Alignment location	jgi.p\|Nanoce1779_2\|617427:1616..3168 -
Alignment location	jgi.p\|Nanoce1779_2\|617427:1616..3168 -
Alignment location	CDS_11825:2326..3138 -
Alignment location	jgi.p\|Nanoce1779_2\|617434:5262..10219 +
Alignment location	jgi.p\|Nanoce1779_2\|617434:5262..10219 +
Alignment location	CDS_11827:5926..5951 +
Alignment location	CDS_11827:6344..6483 +
Alignment location	CDS_11827:6660..6871 +
Alignment location	CDS_11827:7045..7149 +
Alignment location	CDS_11827:7392..7508 +
Alignment location	CDS_11827:7633..7767 +
Alignment location	CDS_11827:7906..7962 +
Alignment location	CDS_11827:8088..8177 +
Alignment location	CDS_11827:8401..8547 +
Alignment location	CDS_11827:8715..8908 +
Alignment location	CDS_11827:9024..9162 +
Alignment location	CDS_11827:9263..9433 +
Alignment location	jgi.p\|Nanoce1779_2\|617450:10238..11734 -
Alignment location	jgi.p\|Nanoce1779_2\|617450:10238..11734 -
Alignment location	CDS_11828:11306..11398 -
Alignment location	CDS_11828:11065..11192 -
Alignment location	CDS_11828:10697..10804 -
Alignment location	CDS_11828:10528..10606 -
Alignment location	CDS_11828:10339..10395 -
Alignment location	jgi.p\|Nanoce1779_2\|617469:18442..20985 +
Alignment location	jgi.p\|Nanoce1779_2\|617469:18442..20985 +
Alignment location	CDS_11830:18552..18560 +
Alignment location	CDS_11830:18703..18766 +
Alignment location	CDS_11830:18921..19069 +
Alignment location	CDS_11830:19185..19277 +
Alignment location	CDS_11830:19529..19639 +
Alignment location	CDS_11830:19923..20033 +
Alignment location	CDS_11830:20202..20283 +
Alignment location	CDS_11830:20459..20739 +
Alignment location	jgi.p\|Nanoce1779_2\|617481:21314..26065 -
Alignment location	jgi.p\|Nanoce1779_2\|617481:21314..26065 -
Alignment location	CDS_11832:25944..25979 -
Alignment location	CDS_11832:25654..25770 -
Alignment location	CDS_11832:25456..25536 -
Alignment location	CDS_11832:25123..25215 -
Alignment location	CDS_11832:24817..24906 -
Alignment location	CDS_11832:24512..24660 -
Alignment location	CDS_11832:24225..24372 -
Alignment location	CDS_11832:23995..24086 -
Alignment location	CDS_11832:23806..23887 -
Alignment location	CDS_11832:23524..23673 -
Alignment location	jgi.p\|Nanoce1779_2\|617486:26104..26671 +
Alignment location	jgi.p\|Nanoce1779_2\|617486:26104..26671 +
Alignment location	CDS_11833:26168..26305 +
Alignment location	CDS_11833:26428..26532 +
Alignment location	jgi.p\|Nanoce1779_2\|634895:13976..18467 +
Alignment location	jgi.p\|Nanoce1779_2\|634895:13976..18467 +
Alignment location	CDS_11829:14236..14382 +
Alignment location	CDS_11829:14557..14656 +
Alignment location	CDS_11829:14755..14840 +
Alignment location	CDS_11829:14979..15064 +
Alignment location	CDS_11829:15349..15508 +
Alignment location	CDS_11829:15951..16052 +
Alignment location	CDS_11829:16227..16367 +
Alignment location	CDS_11829:16548..16689 +
Alignment location	CDS_11829:17111..17212 +
Alignment location	CDS_11829:17320..17414 +
Alignment location	jgi.p\|Nanoce1779_2\|644315:21548..22966 +
Alignment location	jgi.p\|Nanoce1779_2\|644315:21548..22966 +
Alignment location	CDS_11831:21548..21761 +
Alignment location	CDS_11831:21920..22253 +
Alignment location	CDS_11831:22498..22537 +
Alignment location	CDS_11831:22784..22966 +
Alignment location	jgi.p\|Nanoce1779_2\|675694:30236..33368 +
Alignment location	jgi.p\|Nanoce1779_2\|675694:30236..33368 +
Alignment location	CDS_11835:30500..30520 +
Alignment location	CDS_11835:30682..30823 +
Alignment location	CDS_11835:31016..31142 +
Alignment location	CDS_11835:31297..31414 +
Alignment location	CDS_11835:31573..31695 +
Alignment location	CDS_11835:31862..31986 +
Alignment location	CDS_11835:32330..32441 +
Alignment location	CDS_11835:32654..32707 +
Alignment location	CDS_11835:32852..32905 +
Alignment location	CDS_11835:33049..33102 +
Alignment location	CDS_11835:33245..33367 +
Alignment location	jgi.p\|Nanoce1779_2\|74602:26754..29184 -
Alignment location	jgi.p\|Nanoce1779_2\|617427:2326..3138 -
Alignment location	jgi.p\|Nanoce1779_2\|617434:5926..9433 +
Alignment location	jgi.p\|Nanoce1779_2\|617450:10339..11398 -
Alignment location	jgi.p\|Nanoce1779_2\|617469:18552..20739 +
Alignment location	jgi.p\|Nanoce1779_2\|617481:23524..25979 -
Alignment location	jgi.p\|Nanoce1779_2\|617486:26168..26532 +
Alignment location	jgi.p\|Nanoce1779_2\|634895:14236..17414 +
Alignment location	jgi.p\|Nanoce1779_2\|644315:21548..22966 +
Alignment location	jgi.p\|Nanoce1779_2\|675694:30500..33367 +
Alignment location	ncniL017:1617..33368 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|74602	gene	jgi.p\|Nanoce1779_2\|74602:26643..29613 -
jgi.p\|Nanoce1779_2\|74602	mRNA	jgi.p\|Nanoce1779_2\|74602:26643..29613 -
CDS_11834	CDS	CDS_11834:29009..29184 -
CDS_11834	CDS	CDS_11834:28764..28834 -
CDS_11834	CDS	CDS_11834:28569..28665 -
CDS_11834	CDS	CDS_11834:28268..28403 -
CDS_11834	CDS	CDS_11834:28028..28135 -
CDS_11834	CDS	CDS_11834:27567..27841 -
CDS_11834	CDS	CDS_11834:27382..27449 -
CDS_11834	CDS	CDS_11834:26754..27226 -
jgi.p\|Nanoce1779_2\|617427	gene	jgi.p\|Nanoce1779_2\|617427:1616..3168 -
jgi.p\|Nanoce1779_2\|617427	mRNA	jgi.p\|Nanoce1779_2\|617427:1616..3168 -
CDS_11825	CDS	CDS_11825:2326..3138 -
jgi.p\|Nanoce1779_2\|617434	gene	jgi.p\|Nanoce1779_2\|617434:5262..10219 +
jgi.p\|Nanoce1779_2\|617434	mRNA	jgi.p\|Nanoce1779_2\|617434:5262..10219 +
CDS_11827	CDS	CDS_11827:5926..5951 +
CDS_11827	CDS	CDS_11827:6344..6483 +
CDS_11827	CDS	CDS_11827:6660..6871 +
CDS_11827	CDS	CDS_11827:7045..7149 +
CDS_11827	CDS	CDS_11827:7392..7508 +
CDS_11827	CDS	CDS_11827:7633..7767 +
CDS_11827	CDS	CDS_11827:7906..7962 +
CDS_11827	CDS	CDS_11827:8088..8177 +
CDS_11827	CDS	CDS_11827:8401..8547 +
CDS_11827	CDS	CDS_11827:8715..8908 +
CDS_11827	CDS	CDS_11827:9024..9162 +
CDS_11827	CDS	CDS_11827:9263..9433 +
jgi.p\|Nanoce1779_2\|617450	gene	jgi.p\|Nanoce1779_2\|617450:10238..11734 -
jgi.p\|Nanoce1779_2\|617450	mRNA	jgi.p\|Nanoce1779_2\|617450:10238..11734 -
CDS_11828	CDS	CDS_11828:11306..11398 -
CDS_11828	CDS	CDS_11828:11065..11192 -
CDS_11828	CDS	CDS_11828:10697..10804 -
CDS_11828	CDS	CDS_11828:10528..10606 -
CDS_11828	CDS	CDS_11828:10339..10395 -
jgi.p\|Nanoce1779_2\|617469	gene	jgi.p\|Nanoce1779_2\|617469:18442..20985 +
jgi.p\|Nanoce1779_2\|617469	mRNA	jgi.p\|Nanoce1779_2\|617469:18442..20985 +
CDS_11830	CDS	CDS_11830:18552..18560 +
CDS_11830	CDS	CDS_11830:18703..18766 +
CDS_11830	CDS	CDS_11830:18921..19069 +
CDS_11830	CDS	CDS_11830:19185..19277 +
CDS_11830	CDS	CDS_11830:19529..19639 +
CDS_11830	CDS	CDS_11830:19923..20033 +
CDS_11830	CDS	CDS_11830:20202..20283 +
CDS_11830	CDS	CDS_11830:20459..20739 +
jgi.p\|Nanoce1779_2\|617481	gene	jgi.p\|Nanoce1779_2\|617481:21314..26065 -
jgi.p\|Nanoce1779_2\|617481	mRNA	jgi.p\|Nanoce1779_2\|617481:21314..26065 -
CDS_11832	CDS	CDS_11832:25944..25979 -
CDS_11832	CDS	CDS_11832:25654..25770 -
CDS_11832	CDS	CDS_11832:25456..25536 -
CDS_11832	CDS	CDS_11832:25123..25215 -
CDS_11832	CDS	CDS_11832:24817..24906 -
CDS_11832	CDS	CDS_11832:24512..24660 -
CDS_11832	CDS	CDS_11832:24225..24372 -
CDS_11832	CDS	CDS_11832:23995..24086 -
CDS_11832	CDS	CDS_11832:23806..23887 -
CDS_11832	CDS	CDS_11832:23524..23673 -
jgi.p\|Nanoce1779_2\|617486	gene	jgi.p\|Nanoce1779_2\|617486:26104..26671 +
jgi.p\|Nanoce1779_2\|617486	mRNA	jgi.p\|Nanoce1779_2\|617486:26104..26671 +
CDS_11833	CDS	CDS_11833:26168..26305 +
CDS_11833	CDS	CDS_11833:26428..26532 +
jgi.p\|Nanoce1779_2\|634895	gene	jgi.p\|Nanoce1779_2\|634895:13976..18467 +
jgi.p\|Nanoce1779_2\|634895	mRNA	jgi.p\|Nanoce1779_2\|634895:13976..18467 +
CDS_11829	CDS	CDS_11829:14236..14382 +
CDS_11829	CDS	CDS_11829:14557..14656 +
CDS_11829	CDS	CDS_11829:14755..14840 +
CDS_11829	CDS	CDS_11829:14979..15064 +
CDS_11829	CDS	CDS_11829:15349..15508 +
CDS_11829	CDS	CDS_11829:15951..16052 +
CDS_11829	CDS	CDS_11829:16227..16367 +
CDS_11829	CDS	CDS_11829:16548..16689 +
CDS_11829	CDS	CDS_11829:17111..17212 +
CDS_11829	CDS	CDS_11829:17320..17414 +
jgi.p\|Nanoce1779_2\|644315	gene	jgi.p\|Nanoce1779_2\|644315:21548..22966 +
jgi.p\|Nanoce1779_2\|644315	mRNA	jgi.p\|Nanoce1779_2\|644315:21548..22966 +
CDS_11831	CDS	CDS_11831:21548..21761 +
CDS_11831	CDS	CDS_11831:21920..22253 +
CDS_11831	CDS	CDS_11831:22498..22537 +
CDS_11831	CDS	CDS_11831:22784..22966 +
jgi.p\|Nanoce1779_2\|675694	gene	jgi.p\|Nanoce1779_2\|675694:30236..33368 +
jgi.p\|Nanoce1779_2\|675694	mRNA	jgi.p\|Nanoce1779_2\|675694:30236..33368 +
CDS_11835	CDS	CDS_11835:30500..30520 +
CDS_11835	CDS	CDS_11835:30682..30823 +
CDS_11835	CDS	CDS_11835:31016..31142 +
CDS_11835	CDS	CDS_11835:31297..31414 +
CDS_11835	CDS	CDS_11835:31573..31695 +
CDS_11835	CDS	CDS_11835:31862..31986 +
CDS_11835	CDS	CDS_11835:32330..32441 +
CDS_11835	CDS	CDS_11835:32654..32707 +
CDS_11835	CDS	CDS_11835:32852..32905 +
CDS_11835	CDS	CDS_11835:33049..33102 +
CDS_11835	CDS	CDS_11835:33245..33367 +
jgi.p\|Nanoce1779_2\|74602	polypeptide	jgi.p\|Nanoce1779_2\|74602:26754..29184 -
jgi.p\|Nanoce1779_2\|617427	polypeptide	jgi.p\|Nanoce1779_2\|617427:2326..3138 -
jgi.p\|Nanoce1779_2\|617434	polypeptide	jgi.p\|Nanoce1779_2\|617434:5926..9433 +
jgi.p\|Nanoce1779_2\|617450	polypeptide	jgi.p\|Nanoce1779_2\|617450:10339..11398 -
jgi.p\|Nanoce1779_2\|617469	polypeptide	jgi.p\|Nanoce1779_2\|617469:18552..20739 +
jgi.p\|Nanoce1779_2\|617481	polypeptide	jgi.p\|Nanoce1779_2\|617481:23524..25979 -
jgi.p\|Nanoce1779_2\|617486	polypeptide	jgi.p\|Nanoce1779_2\|617486:26168..26532 +
jgi.p\|Nanoce1779_2\|634895	polypeptide	jgi.p\|Nanoce1779_2\|634895:14236..17414 +
jgi.p\|Nanoce1779_2\|644315	polypeptide	jgi.p\|Nanoce1779_2\|644315:21548..22966 +
jgi.p\|Nanoce1779_2\|675694	polypeptide	jgi.p\|Nanoce1779_2\|675694:30500..33367 +
ncniL017	syntenic_region	ncniL017:1617..33368 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications