jgi.p|Nanoce1779_2|598519, mRNA_7377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598519
Unique NamemRNA_7377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1176
Alignment locationscaffold_19:365118..366447 +

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Properties
Property NameValue
TranscriptId598605
TrackFilteredModels2
ProteinId598519
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:365118..366447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598519gene_7377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598519mRNA_7377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7377CDS_7377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7377 ID=mRNA_7377|Name=jgi.p|Nanoce1779_2|598519|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
TACTGTCTGCATCATTTTATACCCACCTTGGCCTACCGGATGGACTTGAA
AAAAGCCCGTGCTACTGCTGCTGCTGCTGCTGCTGTTGTTTCCGCCCCTT
CTTTATCTCCTATATCTTCACAACAACATCGATCGAAGGATCAGGAAGAG
GAGAAAAGGAAGTTTTTAGATATCCTCGCCCTCCTCCCCCCGGGAAGCTT
GGTGGTCACAGACTCCCAAGCCGTCGACATCGTCCACAGCTGGACTTCAC
ACAAGCCCGTGGACATTACTACATTTAGCATCATCATGATCCAACACATG
AGCGGTGGAAAACTTCAGACCTTTATTGATGGGATCGAACGACTGGTAGA
GCTCGAAGGAAGGAAAGGGGAAGAAGGAAGGGAGGGAGGAAGGAAAGCCC
GGGTGCTGATAGCCGAGGCCTGTAATCATGTCAGAATCCCAGAGGCGTGT
GACGATATTGGTTTAATTCAATTACCCAAAGCTATTAAAAAAGCGTTCGC
GAACGTTTCCCTTCAGATCGATCACGCGTATGGCCGTGAATTTCCATTCG
AGGGCTTGAGCAAGCGAGAAGGAGTGAGAGAGGGAGGATGGGAAGAAGGA
AGAGGGATATATGATGTGGTAGTGCATTGTGGGGGGTGCATGATCGATCG
GCAGAAGATAAGGGCACGGATGGAAGAGTGTGAGGAGGCGGGAGTGGCGA
TGACGAATTATGGGTTGTTGTTAGCGTATGCGGCAGGACCTGCCGCATTT
TTACGGGCGATCAAGCCTTTCAATGTACTAGTGCCACCGAGATTATTGAA
GCATGCGTTGGCATTGGAAAAGAAGAAGAGGGAGAGGACGGGTGATGATG
CGGATGAAGGGGAGACACAGGGAGGGAACGATGGAGCACAATCGTGCATG
ATTTCGGCTTGTGCGTTATGTCTGGGGGATTACGGTGGTGGTGGTGCGAC
GAAAAAGGGTATTTGATGTGTACATGAACGATTAGGAAAAGGTAAGAAAA
CTGAACTTGAATAGATAGAGGGCATGATCACACGTAAATAGCAGCCACTC
TTAAATATTTATTCAAGATTTCTATTTTAGTGCTGGCCCAGGTGTGAGTT
CGACCGGGAGGATAACCATTAAATAGCAATAGCAAAGGCATCCTCAAACA
GCGAAAGAAACCCTTATATACATGCT
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protein sequence of jgi.p|Nanoce1779_2|598519

>mRNA_7377-protein ID=mRNA_7377-protein|Name=jgi.p|Nanoce1779_2|598519|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MDLKKARATAAAAAAVVSAPSLSPISSQQHRSKDQEEEKRKFLDILALLP
PGSLVVTDSQAVDIVHSWTSHKPVDITTFSIIMIQHMSGGKLQTFIDGIE
RLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIK
KAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGC
MIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNVLVPP
RLLKHALALEKKKRERTGDDADEGETQGGNDGAQSCMISACALCLGDYGG
GGATKKGI*
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mRNA from alignment at scaffold_19:365118..366447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7377 ID=mRNA_7377|Name=jgi.p|Nanoce1779_2|598519|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at scaffold_19:365118..366447+ (Nannochloropsis oceanica)
TACTGTCTGCATCATTTTATACCCACCTTGGCCTACCGGATGGACTTGAA
AAAAGCCCGTGCTACTGCTGCTGCTGCTGCTGCTGTTGTTTCCGCCCCTT
CTTTATCTCCTATATCTTCACAACAACATCGATCGAAGGATCAGGAAGAG
GAGAAAAGGAAGTTTTTAGATATCCTCGCCCTCCTCCCCCCGGGAAGCTT
GGTGGTCACAGACTCCCAAGCCGTCGACATCGTCCACAGGTGAAGGGAGT
TGGGGGGAGGGAGGGAGTCAGGGAGGGGGAGTCAGAGACAACGTTCTCGT
CTCGATTGGTTGGGGCGTGGATCTAAGATAGAAGAGCATTCTCCTCATCC
AGCCTCTTTCGTCTTTCTTTCCATCCTTCCCTGTCTTCCTTAGCTGGACT
TCACACAAGCCCGTGGACATTACTACATTTAGCATCATCATGATCCAACA
CATGAGCGGTGGAAAACTTCAGACCTTTATTGATGGGATCGAACGACTGG
TAGAGCTCGAAGGAAGGAAAGGGGAAGAAGGAAGGGAGGGAGGAAGGAAA
GCCCGGGTGCTGATAGCCGAGGCCTGTAATCATGTCAGAATCCCAGAGGC
GTGTGACGATATTGGTTTAATTCAATTACCCAAAGCTATTAAAAAAGCGT
TCGCGAACGTTTCCCTTCAGATCGATCACGCGTATGGCCGTGAATTTCCA
TTCGAGGGCTTGAGCAAGCGAGAAGGAGTGAGAGAGGGAGGATGGGAAGA
AGGAAGAGGGATATATGATGTGGTAGTGCATTGTGGGGGGTGCATGATCG
ATCGGCAGAAGATAAGGGCACGGATGGAAGAGTGTGAGGAGGCGGGAGTG
GCGATGACGAATTATGGGTTGTTGTTAGCGTATGCGGCAGGACCTGCCGC
ATTTTTACGGGCGATCAAGCCTTTCAATGTACTAGTGCCACCGAGATTAT
TGAAGCATGCGTTGGCATTGGAAAAGAAGAAGAGGGAGAGGACGGGTGAT
GATGCGGATGAAGGGGAGACACAGGGAGGGAACGATGGAGCACAATCGTG
CATGATTTCGGCTTGTGCGTTATGTCTGGGGGATTACGGTGGTGGTGGTG
CGACGAAAAAGGGTATTTGATGTGTACATGAACGATTAGGAAAAGGTAAG
AAAACTGAACTTGAATAGATAGAGGGCATGATCACACGTAAATAGCAGCC
ACTCTTAAATATTTATTCAAGATTTCTATTTTAGTGCTGGCCCAGGTGTG
AGTTCGACCGGGAGGATAACCATTAAATAGCAATAGCAAAGGCATCCTCA
AACAGCGAAAGAAACCCTTATATACATGCT
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Coding sequence (CDS) from alignment at scaffold_19:365118..366447+

>mRNA_7377 ID=mRNA_7377|Name=jgi.p|Nanoce1779_2|598519|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_19:365118..366447+ (Nannochloropsis oceanica)
ATGGACTTGAAAAAAGCCCGTGCTACTGCTGCTGCTGCTGCTGCTGTTGT
TTCCGCCCCTTCTTTATCTCCTATATCTTCACAACAACATCGATCGAAGG
ATCAGGAAGAGGAGAAAAGGAAGTTTTTAGATATCCTCGCCCTCCTCCCC
CCGGGAAGCTTGGTGGTCACAGACTCCCAAGCCGTCGACATCGTCCACAG
CTGGACTTCACACAAGCCCGTGGACATTACTACATTTAGCATCATCATGA
TCCAACACATGAGCGGTGGAAAACTTCAGACCTTTATTGATGGGATCGAA
CGACTGGTAGAGCTCGAAGGAAGGAAAGGGGAAGAAGGAAGGGAGGGAGG
AAGGAAAGCCCGGGTGCTGATAGCCGAGGCCTGTAATCATGTCAGAATCC
CAGAGGCGTGTGACGATATTGGTTTAATTCAATTACCCAAAGCTATTAAA
AAAGCGTTCGCGAACGTTTCCCTTCAGATCGATCACGCGTATGGCCGTGA
ATTTCCATTCGAGGGCTTGAGCAAGCGAGAAGGAGTGAGAGAGGGAGGAT
GGGAAGAAGGAAGAGGGATATATGATGTGGTAGTGCATTGTGGGGGGTGC
ATGATCGATCGGCAGAAGATAAGGGCACGGATGGAAGAGTGTGAGGAGGC
GGGAGTGGCGATGACGAATTATGGGTTGTTGTTAGCGTATGCGGCAGGAC
CTGCCGCATTTTTACGGGCGATCAAGCCTTTCAATGTACTAGTGCCACCG
AGATTATTGAAGCATGCGTTGGCATTGGAAAAGAAGAAGAGGGAGAGGAC
GGGTGATGATGCGGATGAAGGGGAGACACAGGGAGGGAACGATGGAGCAC
AATCGTGCATGATTTCGGCTTGTGCGTTATGTCTGGGGGATTACGGTGGT
GGTGGTGCGACGAAAAAGGGTATTTGAATGGACTTGAAAAAAGCCCGTGC
TACTGCTGCTGCTGCTGCTGCTGTTGTTTCCGCCCCTTCTTTATCTCCTA
TATCTTCACAACAACATCGATCGAAGGATCAGGAAGAGGAGAAAAGGAAG
TTTTTAGATATCCTCGCCCTCCTCCCCCCGGGAAGCTTGGTGGTCACAGA
CTCCCAAGCCGTCGACATCGTCCACAGCTGGACTTCACACAAGCCCGTGG
ACATTACTACATTTAGCATCATCATGATCCAACACATGAGCGGTGGAAAA
CTTCAGACCTTTATTGATGGGATCGAACGACTGGTAGAGCTCGAAGGAAG
GAAAGGGGAAGAAGGAAGGGAGGGAGGAAGGAAAGCCCGGGTGCTGATAG
CCGAGGCCTGTAATCATGTCAGAATCCCAGAGGCGTGTGACGATATTGGT
TTAATTCAATTACCCAAAGCTATTAAAAAAGCGTTCGCGAACGTTTCCCT
TCAGATCGATCACGCGTATGGCCGTGAATTTCCATTCGAGGGCTTGAGCA
AGCGAGAAGGAGTGAGAGAGGGAGGATGGGAAGAAGGAAGAGGGATATAT
GATGTGGTAGTGCATTGTGGGGGGTGCATGATCGATCGGCAGAAGATAAG
GGCACGGATGGAAGAGTGTGAGGAGGCGGGAGTGGCGATGACGAATTATG
GGTTGTTGTTAGCGTATGCGGCAGGACCTGCCGCATTTTTACGGGCGATC
AAGCCTTTCAATGTACTAGTGCCACCGAGATTATTGAAGCATGCGTTGGC
ATTGGAAAAGAAGAAGAGGGAGAGGACGGGTGATGATGCGGATGAAGGGG
AGACACAGGGAGGGAACGATGGAGCACAATCGTGCATGATTTCGGCTTGT
GCGTTATGTCTGGGGGATTACGGTGGTGGTGGTGCGACGAAAAAGGGTAT
TTGA
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Synonyms
Publications