jgi.p|Nanoce1779_2|599754, gene_7715 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599754
Unique Namegene_7715
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_21:151161..152963 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599840
ProteinId599754
Product nameTFIIE alpha subunit-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:151161..152963 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005673transcription factor TFIIE complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL035ncniL035Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01770NO17G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599754mRNA_7715-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599754mRNA_7715Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|599754

>mRNA_7715-protein ID=mRNA_7715-protein|Name=jgi.p|Nanoce1779_2|599754|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MLHSGGVGGGARGGDGGINTSGNILTGIETPIDLATRLVRAVAQAFYADD
TIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLD
ESTGKRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPHC
GRTLPLLEVQPLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFE
EVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQKPLPSNLPSELLA
VGVGGGQSEEDEIRRRRRGGWCGGMGNHPGGGSAGIFEDLAASTRDGGIQ
ADEETMGESMLNVLRTARAQPSFLQGSRVIKEDTDHLEQAAGSAQQVSRG
EGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKEGG
GVRESVAAVKREVGEEQEDEDEDEVDWEEGE*
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Synonyms
Publications