NO17G01770, NO17G01770 (gene) Nannochloropsis oceanica

Overview
NameNO17G01770
Unique NameNO17G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3813
Alignment locationchr17:511201..515013 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor iie
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:511201..515013 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR017919TFIIE/TFIIEa_HTH
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR002853TFIIE_asu
Homology
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: EWM24246.1 (transcription factor iie [Nannochloropsis gaditana])

HSP 1 Score: 468.8 bits (1205), Expect = 1.900e-128
Identity = 269/409 (65.77%), Postives = 318/409 (77.75%), Query Frame = 0 
Query:   31 PIDLATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTGKRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPHCGRTLPLLEVQPLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQKPLPSNLPSELLAVGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAASTRDGGIQADEETMGESMLNVLRTARAQPSFLQGSRVIKEDTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRK------EGGGV--RESVAAVKREVGEEXXXXXXXXXDWEEGE 432
            P++LA RLVRAVA+AFYADDT+VVL+ALLRDRH++DTD++TRLGVGAKQARRLLTELLEE LI+TED++DE TGKREL+YYIDFSHFTNVVRYR+HLM RELERMEREANDNQTYECP CGR LPLLEVQPLRN+RYGFCCPTCC++E+H+TC+G ++QLRPKTGVTGFEEVQALK+K+R QMY A  ETSAA HDGIYNLLS+LE KPLPSNLPSEL+AVGVG           XXXXXXXXXXXXXXXX S GIFEDLAASTRDGGIQADEET GE+  +++R ARAQPSFLQGSRVIKE  D L+       +  + +   +   + L   +VE   EA+ ++ YR+AY EA ++ +G +   K      + GG+   E + AV+ E             DWEEGE
Sbjct:   32 PLELAKRLVRAVARAFYADDTVVVLDALLRDRHVKDTDIDTRLGVGAKQARRLLTELLEERLIKTEDIVDELTGKRELFYYIDFSHFTNVVRYRIHLMQRELERMEREANDNQTYECPVCGRALPLLEVQPLRNKRYGFCCPTCCSSELHATCEGSQWQLRPKTGVTGFEEVQALKEKMRAQMYGAASETSAALHDGIYNLLSALEHKPLPSNLPSELIAVGVGGLPAGGTELQRXXXXXXXXXXXXXXXXSSIGIFEDLAASTRDGGIQADEET-GETTPSLVRPARAQPSFLQGSRVIKEVADPLQ------HETRKPQATGNEVADGLFMHKVE--EEAKHVDVYRQAYAEAFKRGVGVETIEKSIKVERDDGGLDGSEGIEAVEEE-----------DVDWEEGE 420
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: XP_009525065.1 (hypothetical protein PHYSODRAFT_299693 [Phytophthora sojae] >EGZ22348.1 hypothetical protein PHYSODRAFT_299693 [Phytophthora sojae])

HSP 1 Score: 129.0 bits (323), Expect = 3.500e-26
Identity = 134/399 (33.58%), Postives = 203/399 (50.88%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYEC--PHCGRTLPLLEVQ-PLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSL-----EQKPLPSNLPSELLAVGVG---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAASTRDGGIQADEETMG--------ESMLNVLRTARAQPSFLQGSRVIKE-DTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKE 399
            L  +LV  V +AFY+D+ +VVL AL+R++ ++D +M   + +  +Q R+++ EL +++L+  E + D+  G      Y+YID+ +F +VV+YR++LMH  L+  E+   + QT++C  P CGR    LE Q  L   +Y F C  C  NE+   CD     LR          +Q+L+ K + QM           H+GIY +L  +     E   LPSNLPS+  A G+G               XXXXXXXXXXXXXXXXXXX            I  D+A     G  QA++E +         E+    +   RA P FLQGS +       HL+ AA + ++ +        G + L + E   +TE +R EA++RAY+  L++   E+N+  E
Sbjct:    4 LVEKLVNLVGRAFYSDEHVVVLSALIREKFMKDDEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQYQFRCGHC--NELLLECDNNDRLLR----------IQSLQRKFKDQM-----NKQNGMHEGIYEVLRRIGDFVKEGHALPSNLPSDNRAAGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLYPYGSQDQEIIVDIA-----GNDQAEDEYLASRERKEDKEAANQQVAAPRALPEFLQGSSISGHMAAKHLQPAAAAVEEKAIPMESGIQGVDPLTQSE---MTEEQRQEAFKRAYMAELER-YNEENHDGE 376
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: XP_008609430.1 (hypothetical protein SDRG_05492 [Saprolegnia diclina VS20] >EQC37268.1 hypothetical protein SDRG_05492 [Saprolegnia diclina VS20])

HSP 1 Score: 125.9 bits (315), Expect = 2.900e-25
Identity = 82/231 (35.50%), Postives = 123/231 (53.25%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPH--CGRTLPLLEVQPLRN-QRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQ-----KPLPSNLPSELLAVGVG 255
            L  +LVR +A+AFY+D+ IVVLEALLR+R L+D +M   + +  KQ R++  +L +E +I  E++ D+  G   +  Y+YID+ HF NVVRYR++++   L+  E+   + QT+ C +  CGR    LE Q L     Y F C  C             F+L         + ++ L  K + Q+    D      HDGIY  L+ + +     + LPSNLPSE  A G+G
Sbjct:    4 LVEKLVRLIARAFYSDEHIVVLEALLRERFLKDDEMGNAVNLQTKQVRKICHDLEKEDMISREELNDKKLGGASKATYWYIDYKHFVNVVRYRLYIIAHHLKESEQLEIERQTFRCSNDDCGREYTALEAQLLLTPDVYEFHCGHC------------NFKLVECDNNEKLQTIKGLLAKFKVQLNRQED-----MHDGIYECLARISEWQNSGQALPSNLPSENRAAGIG 217
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: XP_012199907.1 (hypothetical protein SPRG_05942 [Saprolegnia parasitica CBS 223.65] >KDO29405.1 hypothetical protein SPRG_05942 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.9 bits (315), Expect = 2.900e-25
Identity = 82/231 (35.50%), Postives = 123/231 (53.25%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPH--CGRTLPLLEVQPLRN-QRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQ-----KPLPSNLPSELLAVGVG 255
            L  +LVR +A+AFY+D+ IVVLEALLR+R L+D +M   + +  KQ R++  +L +E +I  E++ D+  G   +  Y+YID+ HF NVVRYR++++   L+  E+   + QT+ C +  CGR    LE Q L     Y F C  C             F+L         + ++ L  K + Q+    D      HDGIY  L+ + +     + LPSNLPSE  A G+G
Sbjct:    4 LVEKLVRLIARAFYSDEHIVVLEALLRERFLKDDEMGNAVNLQTKQVRKICHDLEKEDMISREELNDKKLGGASKATYWYIDYKHFVNVVRYRLYIIAHHLKESEQLEIERQTFRCSNDDCGREYTALEAQLLLTPDVYEFHCGHC------------NFKLVECDNNEKLQTIKGLLAKFKVQLNRQED-----MHDGIYECLARISEWQNSGQALPSNLPSENRAAGIG 217
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: XP_002903787.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54842.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 125.6 bits (314), Expect = 3.800e-25
Identity = 134/398 (33.67%), Postives = 200/398 (50.25%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYEC--PHCGRTLPLLEVQ-PLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSL-----EQKPLPSNLPSELLAVGVG---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAASTRDGGIQADEETM--------GESMLNVLRTARAQPSFLQGSRVIKEDTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKE 399
            L  +LV  V +AFY+D+ +VVL AL+R++ ++D +M   + +  +Q R+++ EL +++L+  E + D+  G      Y+YID+ +F +VV+YR++LMH  L+  E+   + QT++C  P CGR    LE Q  L   +Y F C  C  NE+   CD     LR          VQ+L+ K + QM           H+GIY +L  +     E   LP+NLPS+  A G+G               XXXXXXXXXXXXXXXXXXX            I  D+A     G  QA++E +         E+    +   RA P FLQGS +         QAA  A +       +  G + L + E   +TE +R EA++RAY+  L++   E+N+  E
Sbjct:    4 LVEKLVNIVGRAFYSDEHVVVLSALIREKFMKDDEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQYQFRCGHC--NELLLECDNNDRLLR----------VQSLQRKFKDQM-----NKQNGLHEGIYEVLRRIGDFVKEGHVLPNNLPSDNRAAGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLYPYGAQDQEIIVDIA-----GNDQAEDEYLTSRERKEDKEAASQQVAAPRALPEFLQGSSISGHMAAKHLQAAAVADEKPMSMETSLQGVDPLTQSE---MTEEQRQEAFKRAYMAELER-YNEENHEGE 375
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: XP_024579347.1 (transcription factor iie [Plasmopara halstedii] >CEG42978.1 transcription factor iie [Plasmopara halstedii])

HSP 1 Score: 125.6 bits (314), Expect = 3.800e-25
Identity = 132/395 (33.42%), Postives = 191/395 (48.35%), Query Frame = 0 
Query:   32 IDLATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYEC--PHCGRTLPLLEVQ-PLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSL-----EQKPLPSNLPSELLAVGVG---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAASTR---DGGIQADEETMGESMLNVLRTARAQPSFLQGSRVIKEDTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKE 399
            + L  +LV  V +AFY+D+ +VVL AL+R++ L+D DM   + +  +Q R+++ EL +++L+  E + D+  G      Y+YID+ +F +VV+YR++LMH  L+  E+   + QT++C  P CGR    LE Q  L   ++ F C  C  NE+   CD     LR          +Q L+ K + QM          +HDGIY +L  +     E   LP+NLPSE  A G+G               XXXXXXXXXXXXXXXXX              I  D+A + +   D     D +   E     +   RA P FLQGS +         Q+  S    S         G   P +    +TE ER EA++RAY+  L++   ED Y  E
Sbjct:    2 VGLVEKLVYLVGRAFYSDEHVVVLGALMREKFLKDDDMGNAMNLQTRQVRKIMNELHQDNLVCEEVLNDKRVGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQFQFRCGHC--NELLLECDNNDRLLR----------IQNLQRKFKDQM-----NKQKGNHDGIYEVLRRIGDFVKEGHALPNNLPSENRAAGLGGTSTRSXXXXXXXXXXXXXXXXXXXXXXXXXXSKSYLYPYGSQDQEIIVDIAGTNQAEDDYLTSRDRKEDKEVASQQVAAPRALPEFLQGSSISGHMAAKHLQSVDSITDDSSISMKTTLKGVHSPSQ--SDMTEEERQEAFKRAYMAELER-YNEDKYEGE 376
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: OQR94776.1 (hypothetical protein ACHHYP_00927 [Achlya hypogyna])

HSP 1 Score: 125.2 bits (313), Expect = 5.000e-25
Identity = 81/231 (35.06%), Postives = 125/231 (54.11%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPH--CGRTLPLLEVQPLRNQR-YGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQ-----KPLPSNLPSELLAVGVG 255
            L  +LVR +A+AFY+D+ IVVLEALLR+R L+D +M   + +  KQ R++  +L +E +I  E++ D+  G   +  Y+YID+ HF NVVRYR++++   L+  E+   + QT+ C +  CGR    LE Q L +   + F C  C  N     CD               + ++ L  K+  Q+ +   +     HDGIY  L+ + +     + LPSNLPSE  A G+G
Sbjct:    4 LVEKLVRLIARAFYSDEHIVVLEALLRERFLKDDEMGNAVNLQTKQVRKICHDLEKEDMISREELNDKKLGGASKATYWYIDYKHFVNVVRYRLYIIAHHLKESEQLEIERQTFRCSNDDCGREYTALEAQLLLSPGVFEFLCGHC--NSKLVECDNNE----------KLQTIKGLLQKVSPQIPLNRQDD---MHDGIYECLARISEWQNSGQALPSNLPSENRAAGIG 219
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: ETI42900.1 (hypothetical protein F443_12067 [Phytophthora parasitica P1569] >ETM42812.1 hypothetical protein L914_11615 [Phytophthora parasitica])

HSP 1 Score: 124.4 bits (311), Expect = 8.600e-25
Identity = 133/399 (33.33%), Postives = 200/399 (50.13%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYEC--PHCGRTLPLLEVQ-PLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSL-----EQKPLPSNLPSELLAVGVG---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAASTRDGGIQADEETM--------GESMLNVLRTARAQPSFLQGSRVIKE-DTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKE 399
            L  +LV  V +AFY+D+ +VVL AL+R++ ++D +M   + +  +Q R+++ EL +++L+  E + D+  G      Y+YID+ +F +VV+YR++LMH  L+  E+   + QT++C  P CGR    LE Q  L   +Y F C  C  NE+   CD     LR          +Q L+ K + QM           H+GIY +L  +     E   LPSNLPS+  A G+G               XXXXXXXXXXXXXXXXXXX            I  D+A     G  QA++E +         E+    +   RA P FLQGS +       HL+ A    + ++        G + L + E   +TE +R EA++RAY+  L++   E+N+  E
Sbjct:    4 LVEKLVNLVGRAFYSDEHVVVLSALIREKFMKDDEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQYQFRCGHC--NELLLECDNNDRLLR----------IQNLQRKFKDQM-----NKQNGMHEGIYEVLRRIGDFVKEGHTLPSNLPSDNRAAGLGGTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLYPYGAQDQEIIVDIA-----GNDQAEDEYLTSRERKEDKEAANQQVAAPRALPEFLQGSSISGHMAAKHLQPAVADEKPIAMETSL--QGVDPLTQSE---MTEEQRQEAFKRAYMAELER-YNEENHEGE 374
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: OWZ16166.1 (hypothetical protein PHMEG_00010084 [Phytophthora megakarya])

HSP 1 Score: 123.6 bits (309), Expect = 1.500e-24
Identity = 133/399 (33.33%), Postives = 200/399 (50.13%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYEC--PHCGRTLPLLEVQ-PLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSL-----EQKPLPSNLPSELLAVGVG---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAASTRDGGIQADEETM--------GESMLNVLRTARAQPSFLQGSRVIKE-DTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKE 399
            L  +LV  V +AFY+D+ +VVL AL+R++ ++D +M   + +  +Q R+++ EL +++L+  E + D+  G      Y+YID+ +F +VV+YR++LMH  L+  E+   + QT+ C  P CGR    LE Q  L   ++ F C  C  NE+   CD     LR          +Q L+ K + QM           H+GIY +L  +     E   LP+NLPS+  A G+G               XXXXXXXXXXXXXXXXXXX            I  D+A     G  QA++E +         E+    +   RA P FLQGS +       HL+ A  +A+Q S     +  G + L       +TE +R EA++RAY+  L++   E+N+  E
Sbjct:    4 LVEKLVNLVGRAFYSDEHVVVLSALIREKFMKDDEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFMCSDPECGREYTALEAQLLLMPGQFQFRCGHC--NELLLECDNNDRLLR----------IQNLQRKFKDQM-----NKQNGMHEGIYEVLRRIGDFVKEGHALPNNLPSDNRAAGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLYPYGAQDQEIIVDIA-----GNDQAEDEYLTSRERKEDKEAANQQVAAPRALPEFLQGSSISGHMAAKHLQPATVAAEQKSVAMESSVQGVDPLTH-----MTEEQRQEAFKRAYMAELER-YNEENHEGE 374
[Close]
BLAST of NO17G01770 vs. NCBI_GenBank
Match: ETK82936.1 (hypothetical protein L915_11780 [Phytophthora parasitica] >ETL36315.1 hypothetical protein L916_11705 [Phytophthora parasitica] >ETP12675.1 hypothetical protein F441_12033 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 123.2 bits (308), Expect = 1.900e-24
Identity = 137/394 (34.77%), Postives = 204/394 (51.78%), Query Frame = 0 
Query:   34 LATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLDESTG--KRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYEC--PHCGRTLPLLEVQ-PLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIYNLLSSL-----EQKPLPSNLPSELLAVGVG---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGIFEDLAAS--TRDGGIQADEETMGESMLN-VLRTARAQPSFLQGSRVIKE-DTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKE 399
            L  +LV  V +AFY+D+ +VVL AL+R++ ++D +M   + +  +Q R+++ EL +++L+  E + D+  G      Y+YID+ +F +VV+YR++LMH  L+  E+   + QT++C  P CGR    LE Q  L   +Y F C  C  NE+   CD     LR          +Q L+ K + QM           H+GIY +L  +     E   LPSNLPS+  A G+G               XXXXXXXXXXXXXXXXXXXXXXXXX      I  D+A +    D  + + E    +   N  +   RA P FLQGS +       HL+ A    + ++        G + L + E   +TE +R EA++RAY+  L++   E+N+  E
Sbjct:    4 LVEKLVNLVGRAFYSDEHVVVLSALIREKFMKDDEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQYQFRCGHC--NELLLECDNNDRLLR----------IQNLQRKFKDQM-----NKQNGMHEGIYEVLRRIGDFVKEGHTLPSNLPSDNRAAGLGGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQDQEIIVDIAGNDHAEDEYLTSRERKEDKEAANQQVAAPRALPEFLQGSSISGHMAAKHLQPAVADEKPIAMETSL--QGVDPLTQSE---MTEEQRQEAFKRAYMAELER-YNEENHEGE 374
The following BLAST results are available for this feature:
BLAST of NO17G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24246.11.900e-12865.77transcription factor iie [Nannochloropsis gaditana... [more]
XP_009525065.13.500e-2633.58hypothetical protein PHYSODRAFT_299693 [Phytophtho... [more]
XP_008609430.12.900e-2535.50hypothetical protein SDRG_05492 [Saprolegnia dicli... [more]
XP_012199907.12.900e-2535.50hypothetical protein SPRG_05942 [Saprolegnia paras... [more]
XP_002903787.13.800e-2533.67conserved hypothetical protein [Phytophthora infes... [more]
XP_024579347.13.800e-2533.42transcription factor iie [Plasmopara halstedii] >C... [more]
OQR94776.15.000e-2535.06hypothetical protein ACHHYP_00927 [Achlya hypogyna... [more]
ETI42900.18.600e-2533.33hypothetical protein F443_12067 [Phytophthora para... [more]
OWZ16166.11.500e-2433.33hypothetical protein PHMEG_00010084 [Phytophthora ... [more]
ETK82936.11.900e-2434.77hypothetical protein L915_11780 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002959NSK002959Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01770.3NO17G01770.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G01770.2NO17G01770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G01770.1NO17G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599754gene_7715Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g24gene6235Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01770.3NO17G01770.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G01770.2NO17G01770.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G01770.1NO17G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01770 ID=NO17G01770|Name=NO17G01770|organism=Nannochloropsis oceanica|type=gene|length=3813bp
GCTTGCCGTCGTTCCTTTTCCTCTTGTGTGTTGACCACGCTCGTTTGTCA
ATGATGGGTTTTCAGATTGCTCACTCTCCGTTCTTTTTCCAGTTTTCAAC
TTGGGCGTTGGGACAATCTCTCTCATATATTCACACACACGACAGGTCAC
TCATGAATGGCAGGAAACACGTCCGATTTAATTTCATACGTGTGATGAGA
GGTCCCTCAACATAGAATTATGAACAAGGAGAAGTACAAGGTGTTGGTGC
GTCCCTCTCTTGTCAGGAATTGAAATACACCTTTTCTCACCATCCCACGT
CCACTCATTCAACTGATAGATGAGAATACCAGAAAAATGTTAGCCCGGTC
TCGGAATTGTCTTCGGCAAGAGTTTGATAAAGgtacaggataaaaggggg
tagggggaagaggcatcatgattatcccgtctttaagtgttcttccactt
tcttcttcagtgatggtctatacaggtcatgtatcgtcatatatcgtttt
ttctcgcttcttctatctcgtttttcctctctttctctcacttcaaaagT
ACAGCTGCTGTGCGTCCTGCGGGTACTGCTCCACCGGGCACACAAAGCAC
TTGAACCGCTGCTGCGGATGCCCGCCGTTGTGCCCATGCCCGCCCTTCAT
CAGCCTTGCGAGGCTACTGCGGCAAATGACATGCCCACATTTGAGCATCA
TGGGAGGATTCGCCCAACTGGCCTGCTCCCTCGTGACAGGACAAGAAAAG
ACGCTGTGAAACCGCAGGGAGGGTTTCCCCCCAAGGTCGATCTCCCCCGG
CAACTCCTCCAGCCCCTCCCAATCCCCCGTGCTATTCTGCACCACCTGTC
GCATCTTCGCCAAGGGTCCAAGCGCCCGCAGACTGGCGCGATAGCACACA
CTCAACGGGCTTTCTACCGGTAGGCCGAGCAAGCGACAGCCTTCCGTGTG
CAGCGCCTCCATGGCTTCCTCCCACAACTCCGGCGAGAGCAAGTCCTGGT
AGGGTGAACGGTCAAGGCGGCCCGCATAGAGCAGACATCCCATCAGCGTC
CGCACTTGCTCCATGTGGCCGCCGCCGGCTACGGCGAAAGGGGCGAGGTG
CTGTCGTGCAAAAGTCAAAGCCACGTCATCTCGGATCCGCTTCCGTCCCC
GCTCATGTTTGCTCTTCCCCTCTTCCTCCTCATCCTTGGCGTCTTCCATC
TTTACAACCTCTGTCTCTTTCCATCTGGCATTACAGACATTATCCCTAGT
CAACAGTACGAGGAACTGGAGTCGCGCAAGCTGAAACTCCAGGTTGCTTC
CCAGTCGCTGCAACCCCTCGTGATGCTCTGCCGCCCACCGACAAGCCGGT
CCCAACTCTCGGCGCTCAATCGCCGCAGTGATCACTTTATGTACACGAGC
CAATGCTTCGTGCGCTTCAAATCGAAGTGCCGCTGATGAAAGACCCGCTT
CTTCCACGAGCTTGGCGGCGGTGCACGTCCTTCCTTCGCGGTAGAGGTGC
AAGGCCACCATCTCATCAATCAGGCGAGGATCCAGAGTTACGGAGGGGCG
GCACATTACGACTGGTGGTTTGGCCTCTAGAAAGATCCGGTCCACGGCCT
TGATGAATTTGGAAAGGGCAGCGTGGTAGGTCTTGTGCTGCTGGACCAGC
TGCGGAATGACATCATCGAGGGAGGTTGGGGAAGGAGGACCGCGGGAGGT
CGTGGATGCTGTCGCTGTGGCAACTTCTTCCACAGCCACGCTCACCCTGT
CCACCAACCGCAACGTTACCTCCGTATTCTGGCGCTGTTTATCCCGGAGC
CGTGCCCAGTCCGCGAGCAGGCTGTCACACATAGCTAGGCTATAGTTTGT
TAGTACGAGGCGTGCAATAATGATGTAAGCTGTACGATGCAGGAGGGAGG
TGGCTGCCTTTCTAGCCCTCCATGGGTGGATGTTTCCTGTATAAATGGAT
AAAAGAGGAGGCTGAGGTTGTTGTGGCATGAGCTTGTCGGAAGAGCGCCT
TTGTGTCATGTGTCATGTCAATATGGACCCTGGAGAAGAAAGAAAGAGGG
CGCTGCACCCCAGCTCATTTTCACTCGATCCACTCACCATCATATACCGC
AACATACAGGTGGCTGTGGGGAGGAGGGGGGCAAAGTTACGAAACACTTT
CGGCCTGCGTGACTTCCAGGCTGTCCAGGTAAGGCTTTGCCGGCTTCAGC
CACTTTTTTCTACGCGATGCTGCACAGCGGAGGGGTTGGTGGCGGGGCCA
GAGGAGGAGACGGCGGCATCAACACCAGTGGAAACATTTTGACGGGGATC
GAGACGCCCATCGACCTGGCGACGCGATTAGTGCGGGCCGTGGCGCAGGC
CTTTTATGCGGACGATACAATAGTGGTGCTGGAGGCCTTGCTCCGAGACC
GTCATTTGAGAGACACTGATATGGAGACACGTCTGGGCGTGGGGGCCAAG
CAAGCACGGCGCCTGCTCACGGAGTTATTGGAGGAGCACTTGATCCGGAC
TGAAGACGTGCTAGATGAGTCGACGGGGAAACGGGAATTATACTACTATA
TAGATTTTTCTCACTTTACCAACGTGGTGCGGTACCGGGTCCACCTCATG
CACCGGGAGTTAGAGCGAATGGAGCGGGAGGCCAATGACAACCAAACATA
CGAATGTCCTCACTGCGGCCGCACACTACCGCTCTTAGAGGTGCAACCGT
TGCGCAACCAACGGTATGGGTTTTGCTGTCCTACCTGCTGCAACAATGAA
ATGCACTCCACCTGTGACGGCATCAGGTTTCAGCTTCGGCCAAAGACAGG
CGTGACGGGGTTCGAAGAAGTCCAGGCACTCAAAGATAAGTTACGCACTC
AGATGTACATTGCCACAGACGAAACCAGCGCAGCCTCACACGACGGCATC
TACAACTTGCTATCTTCCTTGGAGCAAAAGCCATTGCCAAGCAACCTGCC
TAGCGAGCTCCTTGCTGTGGGTGTGGGCGGCGGCCAGAGCGAGGAGGACG
AAATTCGGAGGCGCCGACGTGGAGGCTGGTGTGGAGGGATGGGAAATCAT
CCGGGCGGGGGGTCGGCCGGCATCTTCGAAGACCTGGCCGCCTCCACGCG
GGATGGTGGCATCCAGGCGGACGAGGAAACGATGGGCGAATCGATGCTGA
ATGTGTTGCGGACTGCCCGGGCCCAGCCATCCTTTTTGCAGGGCAGTCGT
GTCATCAAGGAGGACACTGACCATCTCGAACAAGCTGCGGGAAGTGCACA
GCAAGTGAGTCGGGGCGAAGGCTTCAATGATAGTGGGGGCAATCAGCTGC
CAAAGAGAGAGGTGGAGGTAATAACCGAGGCCGAGCGAATCGAGGCTTAC
CGGCGGGCGTACGTCGAAGCGTTACAAAAAGAGTTGGGGGAAGATAATTA
TAGGAAGGAGGGTGGAGGGGTTCGAGAATCGGTAGCGGCAGTCAAGAGGG
AGGTAGGCGAAGAGCAAGAGGACGAGGACGAGGACGAGGTCGACTGGGAG
GAAGGCGAGTAACACAGTTGACTTGGCATTCGCGTCTTGACATCTTAGTC
GAGCCTAGGCTCTCCCCAGACAATTGTTGAGTCCATGAGCCCCTTTTGCC
AGAAGTGTCATGGAACCGAATAAAGCCCGGGCGACTGGAGAGCTTTTGGC
GGGCTGTGGCCCATGCTGTCGTGATGTCACACCGATGTACGTGGTTTGAA
CCGACGATGCATGCGTGGTAAAAACAAATGCGACAACATAAAATAAATCG
AAAGAAACTGTTAAGGACGTAAATAGGATAAACACACAAAGAATAAATGC
ACATTGTCGGCAA
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protein sequence of NO17G01770.3

>NO17G01770.3-protein ID=NO17G01770.3-protein|Name=NO17G01770.3|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MMWLWGGGGQSYETLSACVTSRLSSGGVGGGARGGDGGINTSGNILTGIE
TPIDLATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQ
ARRLLTELLEEHLIRTEDVLDESTGKRELYYYIDFSHFTNVVRYRVHLMH
RELERMEREANDNQTYECPHCGRTLPLLEVQPLRNQRYGFCCPTCCNNEM
HSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIY
NLLSSLEQKPLPSNLPSELLAVGVGGGQSEEDEIRRRRRGGWCGGMGNHP
GGGSAGIFEDLAASTRDGGIQADEETMGESMLNVLRTARAQPSFLQGSRV
IKEDTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYR
RAYVEALQKELGEDNYRKEGGGVRESVAAVKREVGEEQEDEDEDEVDWEE
GE*
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protein sequence of NO17G01770.2

>NO17G01770.2-protein ID=NO17G01770.2-protein|Name=NO17G01770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MMWLWGGGGQSYETLSACVTSRLSSGGVGGGARGGDGGINTSGNILTGIE
TPIDLATRLVRAVAQAFYADDTIVVLEALLRDRHLRDTDMETRLGVGAKQ
ARRLLTELLEEHLIRTEDVLDESTGKRELYYYIDFSHFTNVVRYRVHLMH
RELERMEREANDNQTYECPHCGRTLPLLEVQPLRNQRYGFCCPTCCNNEM
HSTCDGIRFQLRPKTGVTGFEEVQALKDKLRTQMYIATDETSAASHDGIY
NLLSSLEQKPLPSNLPSELLAVGVGGGQSEEDEIRRRRRGGWCGGMGNHP
GGGSAGIFEDLAASTRDGGIQADEETMGESMLNVLRTARAQPSFLQGSRV
IKEDTDHLEQAAGSAQQVSRGEGFNDSGGNQLPKREVEVITEAERIEAYR
RAYVEALQKELGEDNYRKEGGGVRESVAAVKREVGEEQEDEDEDEVDWEE
GE*
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protein sequence of NO17G01770.1

>NO17G01770.1-protein ID=NO17G01770.1-protein|Name=NO17G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MLHSGGVGGGARGGDGGINTSGNILTGIETPIDLATRLVRAVAQAFYADD
TIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLD
ESTGKRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPHC
GRTLPLLEVQPLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFE
EVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQKPLPSNLPSELLA
VGVGGGQSEEDEIRRRRRGGWCGGMGNHPGGGSAGIFEDLAASTRDGGIQ
ADEETMGESMLNVLRTARAQPSFLQGSRVIKEDTDHLEQAAGSAQQVSRG
EGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKEGG
GVRESVAAVKREVGEEQEDEDEDEVDWEEGE*
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Synonyms
Publications