jgi.p|Nanoce1779_2|609085, mRNA_9538 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609085
Unique Name	mRNA_9538
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2410
Alignment location	scaffold_44:43188..45597 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609171
Track	FilteredModels2
ProteinId	609085

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:43188..45597 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609085	gene_9538	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609085	mRNA_9538-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9538	CDS_9538	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:43188..45597+
coding sequence from alignment at scaffold_44:43188..45597+

mRNA sequence

>mRNA_9538 ID=mRNA_9538|Name=jgi.p|Nanoce1779_2|609085|organism=Nannochloropsis oceanica|type=mRNA|length=2410bp
ACAGAGTCTACAGGCGCGCTGCAAAGCCGGCCCACTCTCCCCCACCACTC
AAGCACAACCCCAGCCCTGCAAGCCCCCAAAATATGGCCCCCGCCACCCT
GAAATATAAGCTCAAAAAGGTAGAGGAGGGGCTGGCCGGGGACGAAAAGC
CGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTTGCCGAAACGGAGCCAAG
TGTCCTTTTATGCACGGGGAGGCAGGCGCCGCATCCGAGGAGCGGCCCAA
GGCCACCCCCACAAATAAGACGACAGGTGTGACCAAGAACGCTCAGGCCA
TGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGCAGGCTAAGAAGCGTACG
GCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCCACCAGCACATTTGCCAA
AAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGAGTCCACCGAGGAGGAGG
ACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCGCCCCACCCCTCAACGTC
ATCAAGCCCACAGTTCCTGCGCGACAAGTTCCTGTGCCGACAAAAACTGC
GCCTGCATCCAAAAAGGCAGCTCCTGTCCCCACCCTCAGCAAGCCCGTCG
GCACGGGCAATACTGATGATGTGATGAATCCTTTCCTCGCGATTGCTCGG
CCTCCCACATCCGCGCCGCCCACGCAACAACAGCAACAACAGCAACAGCA
GCAACAGCAGCAACAGCAGCAGCAGAAGAAGAAGCAATTTCCTGCAGGAC
CGGCGACGAACGCCACCCCCGTCACCATAGGAAACAAGAAAAACAACACC
AGTAACACCAAGCCCCCTCCTGTTGCCAAGACCATAGTTCCCGCTCCGAT
AGCGGCAGCAGTGGCTCCAATCGAACGCAGACCTGCTGCACGTGTGACTG
CCGCTGCCCTCACAAACAACAAACCCGCTAATGGAAATGGGGTGGGGATG
CTTGGGAAGATCTCTGCCTTGCCCGTCACTCCATTTACTATCACACACAA
TCACAAGATGGAAATGAAGCAGGAGGAGGTGGAGGTGGAGGACGGAGAGG
TTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAACAGCACTTCAAGGAGGAG
ATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCCAAAAAGGTCAAGAAACA
ACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGTTGTTATGGAGGAGGAGG
TGTGCGTACACGGGGAGAGCAATTGGTCCTGCTGCGTGAAGGCTACTTTG
GATCATGCGCGTTTTGAACCCAACTATCGGGTGGTTGCTAGCAAAACGAA
GGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCACGGGGCGTGGTGCAAGG
ACCTCCCTCACGTCCTCGCTTTGGATTGTGAGATGTGTGCAACCCGGGAT
CCGGTCAGCATGGAGCAGGATGGGAAGGCTTTGATCCGATTAAGTGTAGT
GAGTGGGCACGATGAGAACCAGGTATTGCTTGACACGCTCGTCTTGCCTT
CCTTGCCTGTGGTGGACTATCGCACAGACATCCATGGGATTCGCCCAGAG
GACTTGAGAAGTGTAATGTTTACATTTAGACATGCTCAGGCGGCGATGCT
GCATTTGTGTTGTACCGAGACTGTGCTGGTGGGTCATGGGTTGGCCAACG
ATCTGACTGCTTTAAAAATGAAGCACTCCAAGGTGGTGGACACTGCCCTT
CTCTTCGAGAGGGAGGACGCGCCAAACCATACCCCTGCATTAAAGGACGT
GGCGGGTGCGTTGCTTGGCTTGGATATGCCGGACATGCACGATTCGGTGG
CAGATGCGCAGGTCACGCTGAGAATCGCCCGACACTTTTTGGAGCAGGGA
CCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCGAGCAATAAGAAGGGGAG
GCGGGCAGAGGCACAGCAAAGTTGCCTTTTATTGCATCGGATTCCTCTGT
ATGTGAAGGCGGAACATATCTTGGAGATGTTTCAGAGTCGGACCCATGTC
ATGCCTGTGGCGGTGGATCCAGTAGTGGCGACGGGGGATGGAAGCTTGGG
GAGGGCTACTGCCCGCTTTCTGTCAAAGCACCATGCCGATCTTGCGTTTA
GTACCTTGACGGGCCCGGCTAGGCCTGATAAGGATGGACGGCCCCAGAAG
AGGGTGCATTTGGCGGGGAAGAAGGATTATGTGCAGGTGAGGTTGATGTA
CGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGGGGAGGGAGTGGTGAAAG
AGGATGCGACGTCGTCGCCGCCGGCGAAGATCTTTTAGGGGAGTGAAAGG
GGGGAACAGGGCGGCATATTTTACCATAAGAATGAAAAGGAGTGCAGTTT
GATGAAGAAAGAGGGAAGGGCAGGTAGAGTAATGCAGCAGTAGCAGCAGC
AGCGGCGGCG

protein sequence of jgi.p|Nanoce1779_2|609085

>mRNA_9538-protein ID=mRNA_9538-protein|Name=jgi.p|Nanoce1779_2|609085|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MAPATLKYKLKKVEEGLAGDEKPVCAFFSLPQGCRNGAKCPFMHGEAGAA
SEERPKATPTNKTTGVTKNAQAMQQVRLQLASEQAKKRTAPAPSTPVGGA
TSTFAKRFKRQEPEEEESTEEEDEEEGEEEKVPAPPLNVIKPTVPARQVP
VPTKTAPASKKAAPVPTLSKPVGTGNTDDVMNPFLAIARPPTSAPPTQQQ
QQQQQQQQQQQQQQKKKQFPAGPATNATPVTIGNKKNNTSNTKPPPVAKT
IVPAPIAAAVAPIERRPAARVTAAALTNNKPANGNGVGMLGKISALPVTP
FTITHNHKMEMKQEEVEVEDGEVVEEGGGVEEEQHFKEEIEEEKPVGAVA
KKVKKQQQLQQQRQEEVVMEEEVCVHGESNWSCCVKATLDHARFEPNYRV
VASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKAL
IRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRH
AQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHT
PALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAA
SNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVAT
GDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYV
QVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF*

mRNA from alignment at scaffold_44:43188..45597+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9538 ID=mRNA_9538|Name=jgi.p|Nanoce1779_2|609085|organism=Nannochloropsis oceanica|type=mRNA|length=2410bp|location=Sequence derived from alignment at scaffold_44:43188..45597+ (Nannochloropsis oceanica)
ACAGAGTCTACAGGCGCGCTGCAAAGCCGGCCCACTCTCCCCCACCACTC
AAGCACAACCCCAGCCCTGCAAGCCCCCAAAATATGGCCCCCGCCACCCT
GAAATATAAGCTCAAAAAGGTAGAGGAGGGGCTGGCCGGGGACGAAAAGC
CGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTTGCCGAAACGGAGCCAAG
TGTCCTTTTATGCACGGGGAGGCAGGCGCCGCATCCGAGGAGCGGCCCAA
GGCCACCCCCACAAATAAGACGACAGGTGTGACCAAGAACGCTCAGGCCA
TGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGCAGGCTAAGAAGCGTACG
GCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCCACCAGCACATTTGCCAA
AAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGAGTCCACCGAGGAGGAGG
ACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCGCCCCACCCCTCAACGTC
ATCAAGCCCACAGTTCCTGCGCGACAAGTTCCTGTGCCGACAAAAACTGC
GCCTGCATCCAAAAAGGCAGCTCCTGTCCCCACCCTCAGCAAGCCCGTCG
GCACGGGCAATACTGATGATGTGATGAATCCTTTCCTCGCGATTGCTCGG
CCTCCCACATCCGCGCCGCCCACGCAACAACAGCAACAACAGCAACAGCA
GCAACAGCAGCAACAGCAGCAGCAGAAGAAGAAGCAATTTCCTGCAGGAC
CGGCGACGAACGCCACCCCCGTCACCATAGGAAACAAGAAAAACAACACC
AGTAACACCAAGCCCCCTCCTGTTGCCAAGACCATAGTTCCCGCTCCGAT
AGCGGCAGCAGTGGCTCCAATCGAACGCAGACCTGCTGCACGTGTGACTG
CCGCTGCCCTCACAAACAACAAACCCGCTAATGGAAATGGGGTGGGGATG
CTTGGGAAGATCTCTGCCTTGCCCGTCACTCCATTTACTATCACACACAA
TCACAAGATGGAAATGAAGCAGGAGGAGGTGGAGGTGGAGGACGGAGAGG
TTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAACAGCACTTCAAGGAGGAG
ATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCCAAAAAGGTCAAGAAACA
ACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGTTGTTATGGAGGAGGAGG
TGTGCGTACACGGGGAGAGCAATTGGTCCTGCTGCGTGAAGGCTACTTTG
GATCATGCGCGTTTTGAACCCAACTATCGGGTGGTTGCTAGCAAAACGAA
GGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCACGGGGCGTGGTGCAAGG
ACCTCCCTCACGTCCTCGCTTTGGATTGTGAGATGTGTGCAACCCGGGAT
CCGGTCAGCATGGAGCAGGATGGGAAGGCTTTGATCCGATTAAGTGTAGT
GAGTGGGCACGATGAGAACCAGGTATTGCTTGACACGCTCGTCTTGCCTT
CCTTGCCTGTGGTGGACTATCGCACAGACATCCATGGGATTCGCCCAGAG
GACTTGAGAAGTGTAATGTTTACATTTAGACATGCTCAGGCGGCGATGCT
GCATTTGTGTTGTACCGAGACTGTGCTGGTGGGTCATGGGTTGGCCAACG
ATCTGACTGCTTTAAAAATGAAGCACTCCAAGGTGGTGGACACTGCCCTT
CTCTTCGAGAGGGAGGACGCGCCAAACCATACCCCTGCATTAAAGGACGT
GGCGGGTGCGTTGCTTGGCTTGGATATGCCGGACATGCACGATTCGGTGG
CAGATGCGCAGGTCACGCTGAGAATCGCCCGACACTTTTTGGAGCAGGGA
CCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCGAGCAATAAGAAGGGGAG
GCGGGCAGAGGCACAGCAAAGTTGCCTTTTATTGCATCGGATTCCTCTGT
ATGTGAAGGCGGAACATATCTTGGAGATGTTTCAGAGTCGGACCCATGTC
ATGCCTGTGGCGGTGGATCCAGTAGTGGCGACGGGGGATGGAAGCTTGGG
GAGGGCTACTGCCCGCTTTCTGTCAAAGCACCATGCCGATCTTGCGTTTA
GTACCTTGACGGGCCCGGCTAGGCCTGATAAGGATGGACGGCCCCAGAAG
AGGGTGCATTTGGCGGGGAAGAAGGATTATGTGCAGGTGAGGTTGATGTA
CGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGGGGAGGGAGTGGTGAAAG
AGGATGCGACGTCGTCGCCGCCGGCGAAGATCTTTTAGGGGAGTGAAAGG
GGGGAACAGGGCGGCATATTTTACCATAAGAATGAAAAGGAGTGCAGTTT
GATGAAGAAAGAGGGAAGGGCAGGTAGAGTAATGCAGCAGTAGCAGCAGC
AGCGGCGGCG

Coding sequence (CDS) from alignment at scaffold_44:43188..45597+

>mRNA_9538 ID=mRNA_9538|Name=jgi.p|Nanoce1779_2|609085|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_44:43188..45597+ (Nannochloropsis oceanica)
ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT
GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT
GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA
TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC
CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC
AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC
ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA
GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG
CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT
GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC
CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT
TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG
CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA
GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA
ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC
ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC
TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG
GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA
TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA
GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC
AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC
AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT
TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT
GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG
GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA
CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA
TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG
ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA
CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC
ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT
GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG
TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG
TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC
CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA
CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC
ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG
AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT
GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC
AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG
GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA
TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG
ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG
CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG
GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT
TTTAG

Synonyms

Publications