jgi.p|Nanoce1779_2|613264, mRNA_10837 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613264
Unique NamemRNA_10837
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1467
Alignment locationscaffold_72:32610..35042 -

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Properties
Property NameValue
TranscriptId613350
TrackFilteredModels2
ProteinId613264
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:32610..35042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613264gene_10837Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613264mRNA_10837-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10837CDS_10837Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10837 ID=mRNA_10837|Name=jgi.p|Nanoce1779_2|613264|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
CCGCCTTCCAAGAAGCCCTCCTCCTCTGCCTCCTCTCCGGCGGTGCCCCC
CCCTCATCCTCCTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCGTCTCT
CCAGGCGGGGGAGCGGTTCAAGATGGTGCTGGTCGTGAGGGAGGACCTAG
GCATGAGCACTGGCAAAATAGCCGCGCAGTGCGTGCACGCTGCCCTTGGC
GCCTACCAGGATCTCTCCACCACCTCCACCGACGTCCAGCAGCAAGGCCT
CCTCCTCCTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCA
GAGCCCCCGACCTCTCCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAA
CAAGGCCTCCCTACCCACCTTGTGCGCGATGCGGGCCGCACAGAAGTCAC
TGCCGGGTCCATCACCGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAA
TAGATGCCCATACCGGCTCACTTCGCTTGTTGTGAGGGAGGGAGGAAGGA
AGACAGGGAGGGAGGGATTAAGGGATGGAGGCAAGCAAACCAAGGCGGCG
GCGTTCTAGGGACGAGGAAAAAGAGCGTCTAGGAATGAACGTACTAGAGC
GTAGGGAAGGAGTGGGGCAACAGACAGGGAAAGTAGTGTAGTAGTTTAGA
AACATGTGAAATAAATTGGCAGAATAATATGGATACAAGCGACAGAAGTG
CTGTGCTGTTTTGTTTGCTGTACTGCTGTGCTGCCGTGCGTGAGATCGTC
GTCGCCGCCTTCCCAGGCTCGTAAATCTTGTATTTAATCGTAGATGAGAC
GGAGATAAGTTTTGTTTCTTCTTTGACATGGTGCTGAGATTGGCGTTGAA
CCCTTGCATCTGGCCCATGGCGATATTTTCCGGCCATGTGTGACAATGAC
CCTCCTCCCTCCCTTCTCTGCCCAAAGTCCGTTTTTAAGGGTCTGTCTAT
TCCTTTTCCCATCTCTCGCTCGCTTGCACTCCTCTCACCCATTCAAGCAC
TTTTACCAGGCTTGGAGTCTTTACCAAATTTATTTGTCGTAACTCACTCG
GTCAGATGCCTTCTTCCGCGCGCTCTCTCCCATGTCACCGTCCTCCTCTT
CCTTTCGTGTGCCCTCCTTCCATGCCTCTTTTCCTTTCACCTCCCGCTCC
AGCTCCTCCTCCATCCGATCTAGCTCCTTCTCCTGCTGCTGTAGCTTTTG
GTAACCTTCGGGAGAAAGGGAGGAGGGAGAAATGATCGTATCGCTGTAGC
TATTGCCGCTCGTGGTGGTGCTGCTGTAACGGTGCTGGTGCTGCAGCAAG
AAGGAGCGGGATGCTGTCATGCTGCCGTGCGTGCTACGCAAAGAAAGGAT
GGCAGGGGCAAGGATGCGACGAAATGCAACAAAACTGGAAGAGAGCATGT
TTTATCTTTTGTGCGATGTGGAATCTTGTTTTTTGGGCTTGTGTGATGTG
GTGTCTTGTGTTCTGTT
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protein sequence of jgi.p|Nanoce1779_2|613264

>mRNA_10837-protein ID=mRNA_10837-protein|Name=jgi.p|Nanoce1779_2|613264|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQ
SQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVL
AIGPAPAALIDAHTGSLRLL*
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mRNA from alignment at scaffold_72:32610..35042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10837 ID=mRNA_10837|Name=jgi.p|Nanoce1779_2|613264|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at scaffold_72:32610..35042- (Nannochloropsis oceanica)
CCGCCTTCCAAGAAGCCCTCCTCCTCTGCCTCCTCTCCGGCGGTGCCCCC
CCCTCATCCTCCTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCGTCTCT
CCAGGCGGGGGAGCGGTTCAAGATGGTGCTGGTCGTGAGGGAGGACCTAG
GCATGAGCACTGGCAAAATAGCCGCGCAGTGCGTGCACGGTACGTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCCCCCTCCTTCCTGCTCT
TGTTTGCTTGGGACGAGGACGACACGATCAAAAGCTCGTGTATGCTCGTC
GGCGTCCAGTACCCGGATGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGCGAATGGTTTTGATCCAGCTGCCTTCTCTCTCTCACACACTCACACAC
TCGTGCATACACATGCATGCACACACACACACACTCACAGCTGCCCTCTC
TCACACACATACACATGCACTTAAACATGATCTCACGCATACACATGCAA
GCACACACACACACTCACAGCTGCCCTCTCTCACACACATACACATGCAC
TTAAACATGATCTCACGCATACACATGCAAGCACACACACACACTCACAG
CTGCCCTCTCTCACACACATACACATGCACTTAAACATGATCTCACGCAT
ACACATGCATGCACACACACACACACTCACAGCTGCCCTCTCTCACACAC
ATACACATGCACTTAAACATGATCTCACGCATGCACATGCATGCACACAC
ACACACTCACAGCTGCCCTTGGCGCCTACCAGGATCTCTCCACCACCTCC
ACCGACGTCCAGCAGCAAGGTGTGCCTGCCCCTCCCTCTCTCCCTGCCTC
CTACTGTTCCTCCCTCCCTCATTCCCTCTCATATATTGTATATATTATTA
TTTCATATTCTCCATCGCTTCTTCTCTCCCTCAAGTCTTCCCTCGTTAGG
CGCCCTTGCTTCGTTTAATTTTGTATCACGACCAGCCCCATGTCCTCCTC
ACCCTCTGCTTCCGCTCCTCCTCCTTCCGTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCC
CTCCAGGCCTCCTCCTCCTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGTC
ATAATCCTCAGAGCCCCCGACCTCTCCTCTCTCCAGATCCTGCAGGCGGC
TGCTTCCGAACAAGGTACGCCCCTCCCCTCCTCCCTCCCCCCCTTCCTCC
TCCCTCCTCCCATCGTCCCCTTAATCCGACCTCTCTCCCTCCCTCCCTAA
CTCCCACCCCCTCCTTCCAGGCCTCCCTACCCACCTTGTGCGCGATGCGG
GCCGCACAGAAGTCACTGCCGGGTCCATCACCGTCCTTGCCATAGGCCCC
GCTCCCGCCGCTCTAATAGATGCCCATACCGGCTCACTTCGCTTGTTGTG
AGGGAGGGAGGAAGGAAGACAGGGAGGGAGGGATTAAGGGATGGAGGCAA
GCAAACCAAGGCGGCGGCGTTCTAGGGACGAGGAAAAAGAGCGTCTAGGA
ATGAACGTACTAGAGCGTAGGGAAGGAGTGGGGCAACAGACAGGGAAAGT
AGTGTAGTAGTTTAGAAACATGTGAAATAAATTGGCAGAATAATATGGAT
ACAAGCGACAGAAGTGCTGTGCTGTTTTGTTTGCTGTACTGCTGTGCTGC
CGTGCGTGAGATCGTCGTCGCCGCCTTCCCAGGCTCGTAAATCTTGTATT
TAATCGTAGATGAGACGGAGATAAGTTTTGTTTCTTCTTTGACATGGTGC
TGAGATTGGCGTTGAACCCTTGCATCTGGCCCATGGCGATATTTTCCGGC
CATGTGTGACAATGACCCTCCTCCCTCCCTTCTCTGCCCAAAGTCCGTTT
TTAAGGGTCTGTCTATTCCTTTTCCCATCTCTCGCTCGCTTGCACTCCTC
TCACCCATTCAAGCACTTTTACCAGGCTTGGAGTCTTTACCAAATTTATT
TGTCGTAACTCACTCGGTCAGATGCCTTCTTCCGCGCGCTCTCTCCCATG
TCACCGTCCTCCTCTTCCTTTCGTGTGCCCTCCTTCCATGCCTCTTTTCC
TTTCACCTCCCGCTCCAGCTCCTCCTCCATCCGATCTAGCTCCTTCTCCT
GCTGCTGTAGCTTTTGGTAACCTTCGGGAGAAAGGGAGGAGGGAGAAATG
ATCGTATCGCTGTAGCTATTGCCGCTCGTGGTGGTGCTGCTGTAACGGTG
CTGGTGCTGCAGCAAGAAGGAGCGGGATGCTGTCATGCTGCCGTGCGTGC
TACGCAAAGAAAGGATGGCAGGGGCAAGGATGCGACGAAATGCAACAAAA
CTGGAAGAGAGCATGTTTTATCTTTTGTGCGATGTGGAATCTTGTTTTTT
GGGCTTGTGTGATGTGGTGTCTTGTGTTCTGTT
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Coding sequence (CDS) from alignment at scaffold_72:32610..35042-

>mRNA_10837 ID=mRNA_10837|Name=jgi.p|Nanoce1779_2|613264|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_72:32610..35042- (Nannochloropsis oceanica)
GCCTCCCTACCCACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACTGCC
GGGTCCATCACCGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAATAGA
TGCCCATACCGGCTCACTTCGCTTGTTGTGAGCCTCCTCCTCCTCTCCGC
CTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGAGCCCCCGACCTCT
CCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACAAGCTGCCCTTGGC
GCCTACCAGGATCTCTCCACCACCTCCACCGACGTCCAGCAGCAAGATGG
TGCTGGTCGTGAGGGAGGACCTAGGCATGAGCACTGGCAAAATAGCCGCG
CAGTGCGTGCACGGCCTCCCTACCCACCTTGTGCGCGATGCGGGCCGCAC
AGAAGTCACTGCCGGGTCCATCACCGTCCTTGCCATAGGCCCCGCTCCCG
CCGCTCTAATAGATGCCCATACCGGCTCACTTCGCTTGTTGTGAGCCTCC
TCCTCCTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGA
GCCCCCGACCTCTCCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACA
AGCTGCCCTTGGCGCCTACCAGGATCTCTCCACCACCTCCACCGACGTCC
AGCAGCAAGATGGTGCTGGTCGTGAGGGAGGACCTAGGCATGAGCACTGG
CAAAATAGCCGCGCAGTGCGTGCACGGCCTCCCTACCCACCTTGTGCGCG
ATGCGGGCCGCACAGAAGTCACTGCCGGGTCCATCACCGTCCTTGCCATA
GGCCCCGCTCCCGCCGCTCTAATAGATGCCCATACCGGCTCACTTCGCTT
GTTGTGAGCCTCCTCCTCCTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGT
CATAATCCTCAGAGCCCCCGACCTCTCCTCTCTCCAGATCCTGCAGGCGG
CTGCTTCCGAACAAGCTGCCCTTGGCGCCTACCAGGATCTCTCCACCACC
TCCACCGACGTCCAGCAGCAAGATGGTGCTGGTCGTGAGGGAGGACCTAG
GCATGAGCACTGGCAAAATAGCCGCGCAGTGCGTGCACGGCCTCCCTACC
CACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACTGCCGGGTCCATCAC
CGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAATAGATGCCCATACCG
GCTCACTTCGCTTGTTGTGAGCCTCCTCCTCCTCTCCGCCTGGCAGTCCC
AGGGCGAGCCCGTCATAATCCTCAGAGCCCCCGACCTCTCCTCTCTCCAG
ATCCTGCAGGCGGCTGCTTCCGAACAAGCTGCCCTTGGCGCCTACCAGGA
TCTCTCCACCACCTCCACCGACGTCCAGCAGCAAGATGGTGCTGGTCGTG
AGGGAGGACCTAGGCATGAGCACTGGCAAAATAGCCGCGCAGTGCGTGCA
CG
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Synonyms
Publications