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Properties
| Property Name | Value |
|---|
| TranscriptId | 613647 |
| Track | FilteredModels2 |
| ProteinId | 613561 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:14030..16266 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10676 ID=mRNA_10676|Name=jgi.p|Nanoce1779_2|613561|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
AGTCAAAAGAGCAGTCTCTCCACACCACTCGGACACCATGCTTTACCAAC
GCACCCGACAAATCTTGGCGACCCTTCTTCTTTTCACCGCGACACCTCAA
GGTCCCTTTGCAGAGGGAAAACCCAAGGACAGCAGTGGCAAGACCGACAC
CACCCACCTTGACTATCCCAAGGCCATGAAGCTGGCCACCCTCTTTTACG
ACGCGCAACGAAGCGGTCGACTTCCTGCCAACAACCGCATCCCCTGGCGC
GGAGACAGTGCTCTGGGGGACGGACAAGACCACGGGCTAGATCTGACGGG
GGGCTGGTACGATGCAGGCGACCATGTGAAATTTAATTTTCCGATGGCCT
GGAGTGCGACAACATTGATTTGGGGGGTTTTGGAATTTGGGGATGCTTGG
TCCAAGTCTGGCGAGATGGCAAACATCATTGACACCGTCAAGTGGCCATT
GGATTACTTGCTCAAGTGCCATCCGGACGAAAATACGTACTACGTCCAAG
TGGGCGATGGAGGAGCAGATCATCAGTTTTGGGGGGCGGCTGAGTCGATG
AACATGAACCGTCCTTCCTTCGCTGTGACTCCTCAGAACCCGGGGACGGA
ATTTGCGGCTGAAGGCGCTGCAGCTTTGGCTGCGGGTTCGATCTTGTTTA
AGGGTGATAAGGAATATTCGGATTTGTTGAAGGCGAAAGCGAAGTCTCTG
TTTGAGTTTGCAAATAAGTATCGCGGATCGAGCGACATCTCTGCGCCGTA
TTATAAGAGTTATAGCGGCTACTGGGACGAGCTGGGATGGGCCTCCACCT
GGCTCTACAAGGCAACCAAAGAGCAAAAATACCTCAACATGGTCGAGAAT
GACTTTTATGATGCCTGCTGCGCCGTGACCAACAAGACTGAGTTTTCGTG
GGACAAGAAATCGTCTGCCGTCCAGTTGCTGCTGTTCGAGCTGACAAAGA
AGGAGAAGTACTCGGAAGGCTTCGCGGGCTTCATGGACAGCTTTATGTAT
CACACACCCCGCACGCCCAAGGGTCTTGTGTATTTTGATAAATGGGCCCC
AAACCGTTATAGCGCCAATACGGCCTTCTTGGCTCTGGTGGCAGCGAAGC
ATGGTTTGGAAACTAAGACTTACATTGAGTTCGCCCAGTCTCAAATCGAC
TATATCTTGAAGGCGGGTGGCGATGTGAATCCCGAAACGAACCAGCCGTT
TTATTCGTACCAGATTGGATTCGGTGATAAGTACCCACGCGCACCTCACC
ATCGGGGGGCGTCCTGTGGGAATGGATGGTGCGGGTGCTCGAGTTCTCCT
CAGCCTAACATTCTGTACGGAGCAATGGTGGGTGGTCCGGGGCAAAATGA
TGATTATTCGGATGATTGCGGGAACTACGTGACGAACGAAGTGGCGACTG
ATTACAATGCTGGTTTCACGTCTGCTTGCGCCGGCCTTGCTCAGCTGGTC
TTGAAGCTCAACAAGTAAATACATCGCATGCCAGACATGGGAGGTGTGAT
CAGTGGAGAAAGCGAAAGGAGGAGACAAAAACAGACCAGAGACAAACGGG
AAAATAAAGTAAATGTCTAGATGTACTCAAAGAAGGAATAAGAAAGGGAT
TGACATTCGCAATGTGCCATGGAATGGCACAAAGTGAGGGTGATAGAATA
AAACAGGAAGGGGTAAGCGATAAGTCGGCATGTGTGTGCATGTGAAGAGA
CGAGAAATATGGGGAGAATTCAAATTCTAGCAGAAAGGAGAAATATAAAA
GGACCATATAGATATTG back to topprotein sequence of jgi.p|Nanoce1779_2|613561 >mRNA_10676-protein ID=mRNA_10676-protein|Name=jgi.p|Nanoce1779_2|613561|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MLYQRTRQILATLLLFTATPQGPFAEGKPKDSSGKTDTTHLDYPKAMKLA
TLFYDAQRSGRLPANNRIPWRGDSALGDGQDHGLDLTGGWYDAGDHVKFN
FPMAWSATTLIWGVLEFGDAWSKSGEMANIIDTVKWPLDYLLKCHPDENT
YYVQVGDGGADHQFWGAAESMNMNRPSFAVTPQNPGTEFAAEGAAALAAG
SILFKGDKEYSDLLKAKAKSLFEFANKYRGSSDISAPYYKSYSGYWDELG
WASTWLYKATKEQKYLNMVENDFYDACCAVTNKTEFSWDKKSSAVQLLLF
ELTKKEKYSEGFAGFMDSFMYHTPRTPKGLVYFDKWAPNRYSANTAFLAL
VAAKHGLETKTYIEFAQSQIDYILKAGGDVNPETNQPFYSYQIGFGDKYP
RAPHHRGASCGNGWCGCSSSPQPNILYGAMVGGPGQNDDYSDDCGNYVTN
EVATDYNAGFTSACAGLAQLVLKLNK* back to topmRNA from alignment at scaffold_76:14030..16266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10676 ID=mRNA_10676|Name=jgi.p|Nanoce1779_2|613561|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp|location=Sequence derived from alignment at scaffold_76:14030..16266- (Nannochloropsis oceanica)
AGTCAAAAGAGCAGTCTCTCCACACCACTCGGACACCATGCTTTACCAAC
GCACCCGACAAATCTTGGCGACCCTTCTTCTTTTCACCGCGACACCTCAA
GGTCCCTTTGCAGAGGGAAAACCCAAGGACAGCAGTGGCAAGACCGACAC
CACCCACCTTGACTATCCCAAGGCCATGAAGCTGGCCACCCTCTTTTACG
ACGCGCAACGAAGGTCAGCCATGAAATGGAATCAACATAAGCAGCATATA
TGACATTTGACAAACATAACAGTATACGCACATCTTTCCCCCCTCCCTCT
CTCTCCTCCCATGCAGCGGTCGACTTCCTGCCAACAACCGCATCCCCTGG
CGCGGAGACAGTGCTCTGGGGGACGGACAAGACCACGGGCTAGATCTGAC
GGGGGGCTGGTACGATGCAGGCGACCATGTGAAATTTAATTTTCCGATGG
CCTGGAGTGCGACAACATTGATTTGGGGGGTTTTGGAATTTGGGGATGCT
TGGTCCAAGTCTGGCGAGATGGCAAACATCATTGACACCGTCAAGTGGCC
ATTGGATTACTTGCTCAAGTGCCATCCGGACGAAAATACGTACTACGTCC
AAGTGGGCGATGGAGGAGCAGATCATCAGTTTTGGGGGGCGGCTGAGTCG
ATGAACATGAACCGTCCTTCCTTCGCTGTGACTCCTCAGAACCCGGGGAC
GGAATTTGCGGCTGAAGGCGCTGCAGCTTTGGCTGCGGGTTCGATCTTGT
TTAAGGGTGATAAGGAATATTCGGATTTGTTGAAGGCGAAAGCGAAGTCT
CTGTTTGAGTTTGCAAATAAGTATCGCGGATCGAGCGACATCTCTGCGCC
GTATTATAAGAGTTATAGGTGGGTAGGGAAGGAGGGAAGGAGGGGAGGGA
GACGGGGAAAAGATCTTGGAGGGGGGGGGGGGGGGGAATCGGTGAGGATA
TGCTGCTTCCTAGTTTGGAATGAGAGGGGGGAGGATGAAAAATTGCACCT
GTCTGTATATGAGCTTGTGGCTTTGTCAGCAGCAGATGTATTCCCTCCCA
TGCTTGTGTCTCATAACCACCGCCAAATAAGGCCCCCCCTCCATCGCTCA
CACCGACACTCTCCCTAAAACGAACAGCGGCTACTGGGACGAGCTGGGAT
GGGCCTCCACCTGGCTCTACAAGGCAACCAAAGAGCAAAAATACCTCAAC
ATGGTCGAGAATGACTTTTATGATGCCTGCTGCGCCGTGACCAACAAGAC
TGAGTTTTCGTGGGACAAGAAATCGTCTGCCGTCCAGTTGCTGCTGTTCG
AGCTGACAAAGAAGGAGAAGTACTCGGAAGGCTTCGCGGGCTTCATGGAC
AGCTTTATGTATCACACACCCCGCACGCCCAAGGGTCTTGTGTATTTTGA
TAAATGGGCCCCAAACCGTTATAGCGCCAATACGGCCTTCTTGGCTCTGG
TGGCAGCGAAGCATGGTTTGGAAACTAAGACTTACATTGAGTTCGCCCAG
TCTCAAATCGACTATATCTTGAAGGCGGGTGGCGATGTGAATCCCGAAAC
GAACCAGCCGTTTTATTCGTACCAGATTGGATTCGGTGATAAGTACCCAC
GCGCACCTCACCATCGGGGGGCGTCCTGTGGGAATGGATGGTGCGGGTGC
TCGAGTTCTCCTCAGCCTAACATTCTGTACGGAGCAATGGTGGGTGGTCC
GGGGCAAAATGATGATTATTCGGATGATTGCGGGAACTACGTGACGAACG
AAGTGGCGACTGGTGAGAAAGGAGGGTGGGGAAGGCGGGGGATTTATATG
TTTTCCTTATTTTTCTTTGGTTTGTGATCTCATACTTATTGTAAAACCCA
CTATACCACACCAAACATAGATTACAATGCTGGTTTCACGTCTGCTTGCG
CCGGCCTTGCTCAGCTGGTCTTGAAGCTCAACAAGTAAATACATCGCATG
CCAGACATGGGAGGTGTGATCAGTGGAGAAAGCGAAAGGAGGAGACAAAA
ACAGACCAGAGACAAACGGGAAAATAAAGTAAATGTCTAGATGTACTCAA
AGAAGGAATAAGAAAGGGATTGACATTCGCAATGTGCCATGGAATGGCAC
AAAGTGAGGGTGATAGAATAAAACAGGAAGGGGTAAGCGATAAGTCGGCA
TGTGTGTGCATGTGAAGAGACGAGAAATATGGGGAGAATTCAAATTCTAG
CAGAAAGGAGAAATATAAAAGGACCATATAGATATTG back to topCoding sequence (CDS) from alignment at scaffold_76:14030..16266- >mRNA_10676 ID=mRNA_10676|Name=jgi.p|Nanoce1779_2|613561|organism=Nannochloropsis oceanica|type=CDS|length=5724bp|location=Sequence derived from alignment at scaffold_76:14030..16266- (Nannochloropsis oceanica)
ATTACAATGCTGGTTTCACGTCTGCTTGCGCCGGCCTTGCTCAGCTGGTC
TTGAAGCTCAACAAGTAACGGCTACTGGGACGAGCTGGGATGGGCCTCCA
CCTGGCTCTACAAGGCAACCAAAGAGCAAAAATACCTCAACATGGTCGAG
AATGACTTTTATGATGCCTGCTGCGCCGTGACCAACAAGACTGAGTTTTC
GTGGGACAAGAAATCGTCTGCCGTCCAGTTGCTGCTGTTCGAGCTGACAA
AGAAGGAGAAGTACTCGGAAGGCTTCGCGGGCTTCATGGACAGCTTTATG
TATCACACACCCCGCACGCCCAAGGGTCTTGTGTATTTTGATAAATGGGC
CCCAAACCGTTATAGCGCCAATACGGCCTTCTTGGCTCTGGTGGCAGCGA
AGCATGGTTTGGAAACTAAGACTTACATTGAGTTCGCCCAGTCTCAAATC
GACTATATCTTGAAGGCGGGTGGCGATGTGAATCCCGAAACGAACCAGCC
GTTTTATTCGTACCAGATTGGATTCGGTGATAAGTACCCACGCGCACCTC
ACCATCGGGGGGCGTCCTGTGGGAATGGATGGTGCGGGTGCTCGAGTTCT
CCTCAGCCTAACATTCTGTACGGAGCAATGGTGGGTGGTCCGGGGCAAAA
TGATGATTATTCGGATGATTGCGGGAACTACGTGACGAACGAAGTGGCGA
CTGCGGTCGACTTCCTGCCAACAACCGCATCCCCTGGCGCGGAGACAGTG
CTCTGGGGGACGGACAAGACCACGGGCTAGATCTGACGGGGGGCTGGTAC
GATGCAGGCGACCATGTGAAATTTAATTTTCCGATGGCCTGGAGTGCGAC
AACATTGATTTGGGGGGTTTTGGAATTTGGGGATGCTTGGTCCAAGTCTG
GCGAGATGGCAAACATCATTGACACCGTCAAGTGGCCATTGGATTACTTG
CTCAAGTGCCATCCGGACGAAAATACGTACTACGTCCAAGTGGGCGATGG
AGGAGCAGATCATCAGTTTTGGGGGGCGGCTGAGTCGATGAACATGAACC
GTCCTTCCTTCGCTGTGACTCCTCAGAACCCGGGGACGGAATTTGCGGCT
GAAGGCGCTGCAGCTTTGGCTGCGGGTTCGATCTTGTTTAAGGGTGATAA
GGAATATTCGGATTTGTTGAAGGCGAAAGCGAAGTCTCTGTTTGAGTTTG
CAAATAAGTATCGCGGATCGAGCGACATCTCTGCGCCGTATTATAAGAGT
TATAGATGCTTTACCAACGCACCCGACAAATCTTGGCGACCCTTCTTCTT
TTCACCGCGACACCTCAAGGTCCCTTTGCAGAGGGAAAACCCAAGGACAG
CAGTGGCAAGACCGACACCACCCACCTTGACTATCCCAAGGCCATGAAGC
TGGCCACCCTCTTTTACGACGCGCAACGAAGATTACAATGCTGGTTTCAC
GTCTGCTTGCGCCGGCCTTGCTCAGCTGGTCTTGAAGCTCAACAAGTAAC
GGCTACTGGGACGAGCTGGGATGGGCCTCCACCTGGCTCTACAAGGCAAC
CAAAGAGCAAAAATACCTCAACATGGTCGAGAATGACTTTTATGATGCCT
GCTGCGCCGTGACCAACAAGACTGAGTTTTCGTGGGACAAGAAATCGTCT
GCCGTCCAGTTGCTGCTGTTCGAGCTGACAAAGAAGGAGAAGTACTCGGA
AGGCTTCGCGGGCTTCATGGACAGCTTTATGTATCACACACCCCGCACGC
CCAAGGGTCTTGTGTATTTTGATAAATGGGCCCCAAACCGTTATAGCGCC
AATACGGCCTTCTTGGCTCTGGTGGCAGCGAAGCATGGTTTGGAAACTAA
GACTTACATTGAGTTCGCCCAGTCTCAAATCGACTATATCTTGAAGGCGG
GTGGCGATGTGAATCCCGAAACGAACCAGCCGTTTTATTCGTACCAGATT
GGATTCGGTGATAAGTACCCACGCGCACCTCACCATCGGGGGGCGTCCTG
TGGGAATGGATGGTGCGGGTGCTCGAGTTCTCCTCAGCCTAACATTCTGT
ACGGAGCAATGGTGGGTGGTCCGGGGCAAAATGATGATTATTCGGATGAT
TGCGGGAACTACGTGACGAACGAAGTGGCGACTGCGGTCGACTTCCTGCC
AACAACCGCATCCCCTGGCGCGGAGACAGTGCTCTGGGGGACGGACAAGA
CCACGGGCTAGATCTGACGGGGGGCTGGTACGATGCAGGCGACCATGTGA
AATTTAATTTTCCGATGGCCTGGAGTGCGACAACATTGATTTGGGGGGTT
TTGGAATTTGGGGATGCTTGGTCCAAGTCTGGCGAGATGGCAAACATCAT
TGACACCGTCAAGTGGCCATTGGATTACTTGCTCAAGTGCCATCCGGACG
AAAATACGTACTACGTCCAAGTGGGCGATGGAGGAGCAGATCATCAGTTT
TGGGGGGCGGCTGAGTCGATGAACATGAACCGTCCTTCCTTCGCTGTGAC
TCCTCAGAACCCGGGGACGGAATTTGCGGCTGAAGGCGCTGCAGCTTTGG
CTGCGGGTTCGATCTTGTTTAAGGGTGATAAGGAATATTCGGATTTGTTG
AAGGCGAAAGCGAAGTCTCTGTTTGAGTTTGCAAATAAGTATCGCGGATC
GAGCGACATCTCTGCGCCGTATTATAAGAGTTATAGATGCTTTACCAACG
CACCCGACAAATCTTGGCGACCCTTCTTCTTTTCACCGCGACACCTCAAG
GTCCCTTTGCAGAGGGAAAACCCAAGGACAGCAGTGGCAAGACCGACACC
ACCCACCTTGACTATCCCAAGGCCATGAAGCTGGCCACCCTCTTTTACGA
CGCGCAACGAAGATTACAATGCTGGTTTCACGTCTGCTTGCGCCGGCCTT
GCTCAGCTGGTCTTGAAGCTCAACAAGTAACGGCTACTGGGACGAGCTGG
GATGGGCCTCCACCTGGCTCTACAAGGCAACCAAAGAGCAAAAATACCTC
AACATGGTCGAGAATGACTTTTATGATGCCTGCTGCGCCGTGACCAACAA
GACTGAGTTTTCGTGGGACAAGAAATCGTCTGCCGTCCAGTTGCTGCTGT
TCGAGCTGACAAAGAAGGAGAAGTACTCGGAAGGCTTCGCGGGCTTCATG
GACAGCTTTATGTATCACACACCCCGCACGCCCAAGGGTCTTGTGTATTT
TGATAAATGGGCCCCAAACCGTTATAGCGCCAATACGGCCTTCTTGGCTC
TGGTGGCAGCGAAGCATGGTTTGGAAACTAAGACTTACATTGAGTTCGCC
CAGTCTCAAATCGACTATATCTTGAAGGCGGGTGGCGATGTGAATCCCGA
AACGAACCAGCCGTTTTATTCGTACCAGATTGGATTCGGTGATAAGTACC
CACGCGCACCTCACCATCGGGGGGCGTCCTGTGGGAATGGATGGTGCGGG
TGCTCGAGTTCTCCTCAGCCTAACATTCTGTACGGAGCAATGGTGGGTGG
TCCGGGGCAAAATGATGATTATTCGGATGATTGCGGGAACTACGTGACGA
ACGAAGTGGCGACTGCGGTCGACTTCCTGCCAACAACCGCATCCCCTGGC
GCGGAGACAGTGCTCTGGGGGACGGACAAGACCACGGGCTAGATCTGACG
GGGGGCTGGTACGATGCAGGCGACCATGTGAAATTTAATTTTCCGATGGC
CTGGAGTGCGACAACATTGATTTGGGGGGTTTTGGAATTTGGGGATGCTT
GGTCCAAGTCTGGCGAGATGGCAAACATCATTGACACCGTCAAGTGGCCA
TTGGATTACTTGCTCAAGTGCCATCCGGACGAAAATACGTACTACGTCCA
AGTGGGCGATGGAGGAGCAGATCATCAGTTTTGGGGGGCGGCTGAGTCGA
TGAACATGAACCGTCCTTCCTTCGCTGTGACTCCTCAGAACCCGGGGACG
GAATTTGCGGCTGAAGGCGCTGCAGCTTTGGCTGCGGGTTCGATCTTGTT
TAAGGGTGATAAGGAATATTCGGATTTGTTGAAGGCGAAAGCGAAGTCTC
TGTTTGAGTTTGCAAATAAGTATCGCGGATCGAGCGACATCTCTGCGCCG
TATTATAAGAGTTATAGATGCTTTACCAACGCACCCGACAAATCTTGGCG
ACCCTTCTTCTTTTCACCGCGACACCTCAAGGTCCCTTTGCAGAGGGAAA
ACCCAAGGACAGCAGTGGCAAGACCGACACCACCCACCTTGACTATCCCA
AGGCCATGAAGCTGGCCACCCTCTTTTACGACGCGCAACGAAGATTACAA
TGCTGGTTTCACGTCTGCTTGCGCCGGCCTTGCTCAGCTGGTCTTGAAGC
TCAACAAGTAACGGCTACTGGGACGAGCTGGGATGGGCCTCCACCTGGCT
CTACAAGGCAACCAAAGAGCAAAAATACCTCAACATGGTCGAGAATGACT
TTTATGATGCCTGCTGCGCCGTGACCAACAAGACTGAGTTTTCGTGGGAC
AAGAAATCGTCTGCCGTCCAGTTGCTGCTGTTCGAGCTGACAAAGAAGGA
GAAGTACTCGGAAGGCTTCGCGGGCTTCATGGACAGCTTTATGTATCACA
CACCCCGCACGCCCAAGGGTCTTGTGTATTTTGATAAATGGGCCCCAAAC
CGTTATAGCGCCAATACGGCCTTCTTGGCTCTGGTGGCAGCGAAGCATGG
TTTGGAAACTAAGACTTACATTGAGTTCGCCCAGTCTCAAATCGACTATA
TCTTGAAGGCGGGTGGCGATGTGAATCCCGAAACGAACCAGCCGTTTTAT
TCGTACCAGATTGGATTCGGTGATAAGTACCCACGCGCACCTCACCATCG
GGGGGCGTCCTGTGGGAATGGATGGTGCGGGTGCTCGAGTTCTCCTCAGC
CTAACATTCTGTACGGAGCAATGGTGGGTGGTCCGGGGCAAAATGATGAT
TATTCGGATGATTGCGGGAACTACGTGACGAACGAAGTGGCGACTGCGGT
CGACTTCCTGCCAACAACCGCATCCCCTGGCGCGGAGACAGTGCTCTGGG
GGACGGACAAGACCACGGGCTAGATCTGACGGGGGGCTGGTACGATGCAG
GCGACCATGTGAAATTTAATTTTCCGATGGCCTGGAGTGCGACAACATTG
ATTTGGGGGGTTTTGGAATTTGGGGATGCTTGGTCCAAGTCTGGCGAGAT
GGCAAACATCATTGACACCGTCAAGTGGCCATTGGATTACTTGCTCAAGT
GCCATCCGGACGAAAATACGTACTACGTCCAAGTGGGCGATGGAGGAGCA
GATCATCAGTTTTGGGGGGCGGCTGAGTCGATGAACATGAACCGTCCTTC
CTTCGCTGTGACTCCTCAGAACCCGGGGACGGAATTTGCGGCTGAAGGCG
CTGCAGCTTTGGCTGCGGGTTCGATCTTGTTTAAGGGTGATAAGGAATAT
TCGGATTTGTTGAAGGCGAAAGCGAAGTCTCTGTTTGAGTTTGCAAATAA
GTATCGCGGATCGAGCGACATCTCTGCGCCGTATTATAAGAGTTATAGAT
GCTTTACCAACGCACCCGACAAATCTTGGCGACCCTTCTTCTTTTCACCG
CGACACCTCAAGGTCCCTTTGCAGAGGGAAAACCCAAGGACAGCAGTGGC
AAGACCGACACCACCCACCTTGACTATCCCAAGGCCATGAAGCTGGCCAC
CCTCTTTTACGACGCGCAACGAAG back to top
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