jgi.p|Nanoce1779_2|638692, mRNA_4164 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638692
Unique NamemRNA_4164
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length468
Alignment locationscaffold_8:1000424..1000891 -

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Properties
Property NameValue
TranscriptId638778
TrackFilteredModels2
ProteinId638692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1000424..1000891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638692gene_4164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4164CDS_4164Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638692mRNA_4164-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4164 ID=mRNA_4164|Name=jgi.p|Nanoce1779_2|638692|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
ATGGGTATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGA
CCCAGGACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAG
CGGGGTGTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTG
GGAAATGAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGAT
GGTATTGGTGCTCTTATCGACGACATTGTGTTTTCGGTTTGATGACGAAA
AGGACCATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTG
GCTTCAAAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTT
GGTAGGAGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAA
AGGAGGAGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATG
GAATGCTTTTACGTCTAG
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protein sequence of jgi.p|Nanoce1779_2|638692

>mRNA_4164-protein ID=mRNA_4164-protein|Name=jgi.p|Nanoce1779_2|638692|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MGMQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWIL
GNEWILEACQYVIVAGMVLVLLSTTLCFRFDDEKDHLTLSPATRAAVRRV
ASKRRQEIEGGKSRQVLVGEEQSRSRAVLVEGKKEEGEEELMQHHATAGM
ECFYV*
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mRNA from alignment at scaffold_8:1000424..1000891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4164 ID=mRNA_4164|Name=jgi.p|Nanoce1779_2|638692|organism=Nannochloropsis oceanica|type=mRNA|length=468bp|location=Sequence derived from alignment at scaffold_8:1000424..1000891- (Nannochloropsis oceanica)
ATGGGTATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGA
CCCAGGACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAG
CGGGGTGTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTG
GGAAATGAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGAT
GGTATTGGTGCTCTTATCGACGACATTGTGTTTTCGGTTTGATGACGAAA
AGGACCATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTG
GCTTCAAAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTT
GGTAGGAGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAA
AGGAGGAGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATG
GAATGCTTTTACGTCTAG
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Coding sequence (CDS) from alignment at scaffold_8:1000424..1000891-

>mRNA_4164 ID=mRNA_4164|Name=jgi.p|Nanoce1779_2|638692|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_8:1000424..1000891- (Nannochloropsis oceanica)
ATGGGTATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGA
CCCAGGACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAG
CGGGGTGTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTG
GGAAATGAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGAT
GGTATTGGTGCTCTTATCGACGACATTGTGTTTTCGGTTTGATGACGAAA
AGGACCATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTG
GCTTCAAAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTT
GGTAGGAGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAA
AGGAGGAGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATG
GAATGCTTTTACGTCTAG
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Synonyms
Publications